Homologs in group_258

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04260 FBDBKF_04260 78.8 Morganella morganii S1 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
EHELCC_05550 EHELCC_05550 78.8 Morganella morganii S2 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
NLDBIP_05870 NLDBIP_05870 78.8 Morganella morganii S4 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
LHKJJB_02750 LHKJJB_02750 78.8 Morganella morganii S3 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
HKOGLL_06225 HKOGLL_06225 78.8 Morganella morganii S5 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
PMI_RS10105 PMI_RS10105 55.8 Proteus mirabilis HI4320 - ATPase, T2SS/T4P/T4SS family
PMI_RS18590 PMI_RS18590 26.6 Proteus mirabilis HI4320 virB11 P-type DNA transfer ATPase VirB11

Distribution of the homologs in the orthogroup group_258

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_258

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P36645 8.46e-114 347 43 9 500 3 hofB Protein transport protein HofB homolog Escherichia coli (strain K12)
P45792 1.99e-99 314 42 4 397 3 tapB Type IV pilus assembly protein TapB Aeromonas hydrophila
P22608 1.09e-98 312 43 7 403 1 pilB Type IV pilus assembly ATPase PilB Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P15645 9.05e-98 307 44 8 398 3 pulE Type II secretion system protein E Klebsiella pneumoniae
Q01566 3.13e-97 306 43 5 396 3 outE Type II secretion system protein E Dickeya dadantii (strain 3937)
P31702 2.91e-96 303 43 5 396 1 outE Type II secretion system protein E Dickeya chrysanthemi
Q6FF45 1.29e-94 302 41 5 383 1 pilB Type IV pilus assembly ATPase PilB Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P37093 3.59e-92 293 40 7 402 1 epsE Type II secretion system ATPase E Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q1D098 1.33e-91 293 41 6 393 1 pilB Type IV pilus assembly ATPase PilB Myxococcus xanthus (strain DK1622)
Q00512 2.99e-91 291 40 7 402 1 xcpR Type II secretion system protein E Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P45759 1.82e-89 286 41 5 391 1 gspE Putative type II secretion system protein E Escherichia coli (strain K12)
P31703 2.09e-87 281 42 6 380 3 outE Type II secretion system protein E Pectobacterium carotovorum subsp. carotovorum
P44622 1.04e-86 278 45 8 346 3 hofB Protein transport protein HofB homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P31741 4.37e-84 272 39 5 378 3 exeE Type II secretion system protein E Aeromonas hydrophila
Q6FA79 1.48e-83 273 35 9 497 3 tfpB Type IV pilus assembly ATPase TfpB Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q9I5N9 9.52e-83 268 39 7 388 2 hxcR Type II secretion system protein HxcR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q5SLC9 7.73e-81 273 40 5 388 1 pilB Type IV pilus assembly ATPase PilB Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
P37094 2.16e-79 261 39 7 386 3 pilF Type IV pilus assembly protein PilF Neisseria gonorrhoeae
P31742 1.62e-78 259 38 5 387 1 xpsE Type II secretion system protein E Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
P25953 2.58e-55 192 39 1 276 1 comGA Competence protein ComGA Bacillus subtilis (strain 168)
Q9K919 8.16e-55 191 39 2 280 3 comGA Competence protein ComGA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P29480 7.42e-31 129 30 13 358 1 tcpT Toxin coregulated pilus biosynthesis protein T Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q8DN86 3.74e-28 117 29 5 267 2 comGA Competence protein ComGA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P24559 2.05e-27 116 31 11 286 1 pilT Type IV pilus retractation ATPase PilT Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P52052 3.36e-23 103 33 9 251 1 yggR Uncharacterized protein YggR Escherichia coli (strain K12)
Q06581 3.94e-21 98 43 3 119 3 pilT Twitching motility protein Neisseria gonorrhoeae
G3XCX3 8.41e-17 85 33 5 152 1 pilU Type IV pilus ATPase PilU Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q58683 1.15e-09 62 36 4 119 3 MJ1287 Uncharacterized protein MJ1287 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58310 6.26e-08 58 36 4 118 3 MJ0900 Uncharacterized protein MJ0900 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P9WMT3 9.9e-08 57 27 6 179 2 Rv3659c Putative conjugal transfer protein Rv3659c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMT2 9.9e-08 57 27 6 179 3 MT3759 Putative conjugal transfer protein MT3759 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P55395 6.81e-07 55 29 5 140 3 trbB Probable conjugal transfer protein TrbB Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P54907 1.02e-06 54 27 4 136 3 trbB Conjugal transfer protein TrbB Rhizobium radiobacter
Q4J9L0 2.21e-06 53 32 4 137 1 flaI Archaeal flagellar ATPase motor FlaI Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
Q6F054 1.86e-05 50 26 8 200 3 pXO2-25 Uncharacterized protein pXO2-25/BXB0023/GBAA_pXO2_0023 Bacillus anthracis
Q58191 0.000131 48 33 4 100 1 MJ0781 Uncharacterized protein MJ0781 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P07169 0.000253 47 31 5 122 3 virB11 Protein VirB11 Agrobacterium fabrum (strain C58 / ATCC 33970)
Q8YDY9 0.000334 46 30 4 122 3 virB11 Type IV secretion system protein VirB11 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P0C534 0.000346 46 30 4 122 3 virB11 Type IV secretion system protein VirB11 Brucella abortus biovar 1 (strain 9-941)
Q2YJ82 0.000346 46 30 4 122 3 virB11 Type IV secretion system protein VirB11 Brucella abortus (strain 2308)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08705
Feature type CDS
Gene -
Product ATPase, T2SS/T4P/T4SS family
Location 1800939 - 1802510 (strand: 1)
Length 1572 (nucleotides) / 523 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_258
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00437 Type II/IV secretion system protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2804 Cell motility (N)
Intracellular trafficking, secretion, and vesicular transport (U)
Extracellular structures (W)		 NUW Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB

Protein Sequence

MQPGTVSPVTHLYGEDQLLFAEVHALCERNELMLIDYNPDAVRIAAAQQPRRDVVSAIRFLAGKRVDIELWHSEKLAYCRQNTPLPEPVLFPGVSPGPSSPANRLRSQAAPVAALSSTAGSPSAEPAPRTDADYYPAEQQSAAVRFVNQLITHAIAKRASDIHIEPIHQGYRIRARIDGQLHTLNSPPPEISSEISIRLKIIAGLDIAEKRLPQDGQFEWLERDVRYAVRIATLPTIYGEKIVLRLLSTSQNLALEKSGLTATQLTTLHTQLNGSQGIILLTGPTGSGKTATLYGCLQYLNQNNRNICSVEDPVEIPLRGITQTQINPKIELGFATILRALLRQDPDVIMVGEIRDKATAEMAIKAAHTGHLVLSTLHTNSPEDTFSRLQQLGIDDYFIRTCIKLVIAQRLVRVLCPHCKTPVSEPVPVTRHNGEIRNITVWQANGCGDCFSGFYGRTACFAFLAPEDNPPAGRTMFYAREPECTENISPALRTTPDSLFDAGIKLAEAGITTLSEIHYMQDI

Flanking regions ( +/- flanking 50bp)

CTTTGTCTCGATGTCATAAAATAACATACTGATATGAAAAGGAATTCATTATGCAACCGGGTACTGTATCTCCCGTTACCCACTTGTACGGGGAAGACCAGCTTTTATTTGCTGAGGTTCATGCTCTCTGTGAACGGAATGAGCTGATGCTGATTGACTATAATCCGGATGCGGTCCGGATAGCCGCCGCACAACAACCCCGCAGGGATGTTGTTTCCGCCATCCGTTTTCTTGCGGGGAAACGCGTTGATATTGAATTATGGCACAGTGAAAAACTGGCCTATTGCCGGCAGAATACACCATTGCCGGAACCGGTACTTTTTCCGGGCGTATCACCGGGGCCCAGTTCTCCGGCAAACCGGCTCCGGTCACAAGCGGCACCCGTTGCTGCGTTGTCATCCACCGCAGGCTCACCATCAGCAGAGCCAGCCCCCCGGACTGATGCAGATTATTATCCCGCAGAGCAGCAATCTGCGGCAGTCCGGTTTGTGAATCAGCTGATAACACATGCCATTGCCAAACGGGCCTCTGATATCCATATAGAACCAATACATCAAGGTTACCGGATCCGCGCGCGGATAGACGGACAACTGCATACACTGAACTCACCACCGCCGGAAATCAGCAGTGAAATATCTATAAGACTGAAAATTATTGCAGGTCTTGATATTGCCGAAAAAAGGTTACCCCAGGATGGTCAGTTTGAATGGCTGGAAAGGGATGTCCGTTATGCCGTGCGTATCGCCACACTGCCGACTATCTATGGTGAAAAAATCGTACTTCGTCTGCTGAGCACCTCACAAAACCTGGCGCTGGAAAAATCCGGGCTGACCGCGACACAGTTGACAACACTTCACACGCAGTTGAATGGTTCTCAGGGAATTATTCTGCTGACAGGCCCGACCGGTAGCGGTAAAACCGCCACACTTTATGGCTGCCTGCAATATCTGAATCAAAACAACCGGAATATCTGCAGTGTTGAGGACCCGGTGGAAATTCCGCTGCGGGGTATAACGCAGACACAAATCAATCCGAAAATTGAACTGGGTTTTGCCACTATACTGCGCGCACTTCTGCGTCAGGACCCTGATGTCATCATGGTTGGTGAGATAAGGGATAAAGCCACCGCAGAGATGGCGATTAAAGCGGCTCATACCGGGCACCTTGTACTGTCCACACTGCATACCAATTCTCCGGAAGACACCTTTTCCCGTTTACAACAACTGGGTATTGATGACTATTTTATCCGGACCTGCATCAAACTGGTTATCGCCCAGCGATTAGTCAGAGTTCTGTGCCCGCACTGCAAAACACCGGTATCAGAACCGGTGCCCGTAACACGGCACAACGGGGAAATCCGTAATATTACTGTGTGGCAGGCAAACGGATGCGGGGACTGTTTTTCCGGTTTTTACGGGCGTACCGCCTGCTTTGCCTTTCTGGCACCGGAAGATAACCCGCCCGCAGGGAGAACCATGTTTTACGCGCGGGAACCGGAATGTACTGAGAATATATCCCCCGCTCTCCGCACCACGCCTGACTCCCTGTTTGATGCAGGTATCAAACTGGCGGAGGCAGGCATAACCACACTCAGTGAAATTCATTATATGCAGGATATCTGAGGAGACCTGACAAACAGGAGTGATGCTATGCGTATTTTCCGGCTTTATCA