COG2804


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2804, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
Function(s) descr. Cell motility (N)
Intracellular trafficking, secretion, and vesicular transport (U)
Extracellular structures (W)

Occurence in the database

COG2804 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_258 FBDBKF_04260 39869 41392 1 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB Morganella morganii S1
1 group_258 EHELCC_05550 99326 100849 1 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB Morganella morganii S2
2 group_258 NLDBIP_05870 140391 141914 1 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB Morganella morganii S4
3 group_258 LHKJJB_02750 117915 119438 1 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB Morganella morganii S3
4 group_258 HKOGLL_06225 39779 41302 1 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB Morganella morganii S5
5 group_258 F4V73_RS08705 1800939 1802510 1 ATPase, T2SS/T4P/T4SS family Morganella psychrotolerans
6 group_258 PMI_RS10105 2207887 2208990 1 ATPase, T2SS/T4P/T4SS family Proteus mirabilis HI4320