Homologs in group_258

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04260 FBDBKF_04260 26.7 Morganella morganii S1 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
EHELCC_05550 EHELCC_05550 26.7 Morganella morganii S2 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
NLDBIP_05870 NLDBIP_05870 26.7 Morganella morganii S4 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
LHKJJB_02750 LHKJJB_02750 26.7 Morganella morganii S3 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
HKOGLL_06225 HKOGLL_06225 26.7 Morganella morganii S5 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
F4V73_RS08705 F4V73_RS08705 26.6 Morganella psychrotolerans - ATPase, T2SS/T4P/T4SS family
PMI_RS10105 PMI_RS10105 28.9 Proteus mirabilis HI4320 - ATPase, T2SS/T4P/T4SS family

Distribution of the homologs in the orthogroup group_258

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_258

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8FXK7 3.42e-64 210 39 3 280 1 virB11 Type IV secretion system protein VirB11 Brucella suis biovar 1 (strain 1330)
Q8YDY9 1.65e-63 209 38 3 280 3 virB11 Type IV secretion system protein VirB11 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P0C534 1.7e-63 208 38 3 280 3 virB11 Type IV secretion system protein VirB11 Brucella abortus biovar 1 (strain 9-941)
Q2YJ82 1.7e-63 208 38 3 280 3 virB11 Type IV secretion system protein VirB11 Brucella abortus (strain 2308)
Q7WDT5 1.57e-61 202 37 7 307 3 ptlH Type IV secretion system protein PtlH homolog Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
Q7VSX3 2.22e-61 202 37 7 307 1 ptlH Type IV secretion system protein PtlH Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Q7W2T7 2.22e-61 202 37 7 307 3 ptlH Type IV secretion system protein PtlH homolog Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
Q6FYW0 1.98e-53 182 32 4 332 3 virB11 Type IV secretion system protein VirB11 Bartonella quintana (strain Toulouse)
Q9RNC7 1.28e-51 177 33 5 327 1 virB11 Type IV secretion system protein VirB11 Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1)
P07169 5.49e-50 173 33 3 295 3 virB11 Protein VirB11 Agrobacterium fabrum (strain C58 / ATCC 33970)
P0A3F8 6.5e-49 170 33 4 302 3 virB11 Protein VirB11 Rhizobium radiobacter
P0A3F9 6.5e-49 170 33 4 302 3 virB11 Protein VirB11 Agrobacterium tumefaciens (strain 15955)
P55395 7.23e-21 94 26 10 318 3 trbB Probable conjugal transfer protein TrbB Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q58310 1.15e-19 93 29 5 244 3 MJ0900 Uncharacterized protein MJ0900 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P54907 2.85e-18 87 25 13 326 3 trbB Conjugal transfer protein TrbB Rhizobium radiobacter
P9WMT3 7.49e-17 84 25 9 286 2 Rv3659c Putative conjugal transfer protein Rv3659c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMT2 7.49e-17 84 25 9 286 3 MT3759 Putative conjugal transfer protein MT3759 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q4J9L0 9.15e-17 84 27 5 234 1 flaI Archaeal flagellar ATPase motor FlaI Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
Q58683 5.64e-16 80 31 8 185 3 MJ1287 Uncharacterized protein MJ1287 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58191 3.44e-15 80 28 12 273 1 MJ0781 Uncharacterized protein MJ0781 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q6F054 2.59e-07 55 28 5 138 3 pXO2-25 Uncharacterized protein pXO2-25/BXB0023/GBAA_pXO2_0023 Bacillus anthracis
P25953 7.1e-05 47 30 5 122 1 comGA Competence protein ComGA Bacillus subtilis (strain 168)
P52052 0.000168 46 31 6 135 1 yggR Uncharacterized protein YggR Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18590
Feature type CDS
Gene virB11
Product P-type DNA transfer ATPase VirB11
Location 11544 - 12578 (strand: 1)
Length 1035 (nucleotides) / 344 (amino acids)

Contig

Accession NC_010555
Length 36289 nucleotides
Topology circular
Plasmid True

Orthology

Orthogroup group_258
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00437 Type II/IV secretion system protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4962 Intracellular trafficking, secretion, and vesicular transport (U)
Extracellular structures (W)		 UW Pilus assembly protein, ATPase of CpaF family

Kegg Ortholog Annotation(s)

Protein Sequence

MSNNNHIVNEIAAQFFGEALTQTDGLTEIAVNRPNQMYLKVKGKWIKKDTLISYDDCKSFASALADFCSDSVSETKPILSATLPTGERVQVVLPPATEQDTISITIRKPSDIFISHEMFVEQGFYSKLDTQAGNIISPATKKLTDLYNSGDIETFIPECLKQGKTIAFCGGTGSGKTTFGNSLLEYIPNHLRVISIEDTPEVKLRFHDNHVRLFYPSEGGKNSIITPAMLLRACYRMNPDRILMTEVRGAEAWDFLKGNSSGHAGGITTLHEDTPMYAVSGMIERCQQNPECHNLPYNVLLRKVLNNIDVILSIKYLDEFDKRYATGIYFKDIHKEQYFNELRD

Flanking regions ( +/- flanking 50bp)

GAAGATCTCGATTTTTCGACTATTTACCAGTTAAAAATGAGTAAAGGCAAATGAGTAACAATAACCACATTGTTAATGAAATAGCGGCACAGTTCTTTGGTGAGGCTCTGACTCAGACTGACGGTTTAACTGAGATTGCAGTTAACCGCCCTAATCAAATGTACCTGAAAGTAAAGGGTAAATGGATAAAAAAAGATACATTAATCAGCTATGATGATTGTAAATCATTTGCCTCAGCACTGGCTGATTTTTGCAGTGATTCAGTCAGTGAAACAAAACCCATTCTCTCCGCAACATTACCGACAGGAGAGCGGGTTCAGGTTGTTCTTCCTCCGGCAACGGAACAAGATACTATTTCTATCACTATCCGTAAGCCGTCCGATATTTTTATCAGCCATGAAATGTTTGTTGAGCAGGGGTTTTATTCAAAATTAGACACGCAAGCAGGAAACATCATCAGTCCTGCCACGAAGAAGTTAACTGATTTATACAATTCCGGTGATATTGAAACCTTTATTCCTGAATGCCTGAAACAGGGAAAAACCATTGCATTTTGCGGAGGAACCGGCAGCGGGAAAACTACTTTTGGAAACTCCTTGCTGGAATATATCCCGAATCATCTGCGAGTCATTTCTATTGAAGATACTCCGGAGGTAAAGCTGCGGTTTCATGACAATCATGTCAGGCTGTTTTACCCGTCTGAGGGCGGAAAAAACAGCATCATAACGCCAGCTATGCTGTTACGTGCCTGTTATCGCATGAATCCAGACCGTATTTTAATGACCGAAGTCAGGGGGGCGGAAGCTTGGGATTTTTTAAAAGGGAACAGTTCGGGGCATGCAGGAGGGATTACTACATTGCATGAAGATACACCGATGTATGCTGTTTCCGGAATGATAGAACGTTGTCAGCAAAATCCGGAGTGCCACAATTTACCGTATAACGTCCTGCTCCGAAAGGTGCTAAATAATATTGATGTAATACTGAGCATTAAATATTTGGACGAATTTGATAAAAGGTATGCGACAGGAATTTACTTTAAAGATATTCATAAAGAGCAGTATTTTAACGAATTAAGGGACTGATAATGAAACTGACCTTACCGGATAAAAAACAATGGCTATTTATCGTCGGA