Homologs in group_258

Help

7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04260 FBDBKF_04260 100.0 Morganella morganii S1 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
EHELCC_05550 EHELCC_05550 100.0 Morganella morganii S2 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
NLDBIP_05870 NLDBIP_05870 100.0 Morganella morganii S4 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
LHKJJB_02750 LHKJJB_02750 100.0 Morganella morganii S3 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
F4V73_RS08705 F4V73_RS08705 78.8 Morganella psychrotolerans - ATPase, T2SS/T4P/T4SS family
PMI_RS10105 PMI_RS10105 54.3 Proteus mirabilis HI4320 - ATPase, T2SS/T4P/T4SS family
PMI_RS18590 PMI_RS18590 26.7 Proteus mirabilis HI4320 virB11 P-type DNA transfer ATPase VirB11

Distribution of the homologs in the orthogroup group_258

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_258

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P36645 2.39e-110 338 41 8 495 3 hofB Protein transport protein HofB homolog Escherichia coli (strain K12)
P45792 4.58e-97 307 44 4 377 3 tapB Type IV pilus assembly protein TapB Aeromonas hydrophila
P22608 2.76e-96 305 45 3 340 1 pilB Type IV pilus assembly ATPase PilB Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P37093 2.12e-95 301 41 5 387 1 epsE Type II secretion system ATPase E Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q01566 1.75e-93 296 45 2 343 3 outE Type II secretion system protein E Dickeya dadantii (strain 3937)
Q6FF45 2.33e-93 298 42 6 378 1 pilB Type IV pilus assembly ATPase PilB Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P45759 1.06e-92 294 46 6 346 1 gspE Putative type II secretion system protein E Escherichia coli (strain K12)
P31702 2.68e-92 293 45 4 347 1 outE Type II secretion system protein E Dickeya chrysanthemi
P15645 4.41e-92 292 44 5 344 3 pulE Type II secretion system protein E Klebsiella pneumoniae
Q1D098 5.78e-92 294 42 7 385 1 pilB Type IV pilus assembly ATPase PilB Myxococcus xanthus (strain DK1622)
Q00512 1.62e-90 288 41 5 391 1 xcpR Type II secretion system protein E Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P31741 6.31e-89 284 42 6 378 3 exeE Type II secretion system protein E Aeromonas hydrophila
P44622 7.07e-87 278 42 10 377 3 hofB Protein transport protein HofB homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P31703 1.44e-85 275 46 5 320 3 outE Type II secretion system protein E Pectobacterium carotovorum subsp. carotovorum
P37094 5.81e-84 273 41 7 379 3 pilF Type IV pilus assembly protein PilF Neisseria gonorrhoeae
Q6FA79 1.7e-83 272 36 7 447 3 tfpB Type IV pilus assembly ATPase TfpB Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q9I5N9 1.22e-81 264 42 4 339 2 hxcR Type II secretion system protein HxcR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q5SLC9 1.13e-79 269 40 7 394 1 pilB Type IV pilus assembly ATPase PilB Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
P31742 6.08e-78 257 39 4 383 1 xpsE Type II secretion system protein E Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
P25953 1.23e-57 198 40 1 273 1 comGA Competence protein ComGA Bacillus subtilis (strain 168)
Q9K919 4.09e-55 191 40 2 273 3 comGA Competence protein ComGA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P29480 8.86e-33 134 29 13 360 1 tcpT Toxin coregulated pilus biosynthesis protein T Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q8DN86 1.4e-31 127 30 5 272 2 comGA Competence protein ComGA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P24559 5.07e-28 117 33 10 256 1 pilT Type IV pilus retractation ATPase PilT Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P52052 1.26e-25 110 32 14 317 1 yggR Uncharacterized protein YggR Escherichia coli (strain K12)
Q06581 2.56e-23 104 36 10 223 3 pilT Twitching motility protein Neisseria gonorrhoeae
G3XCX3 3.07e-18 90 30 7 200 1 pilU Type IV pilus ATPase PilU Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q58683 2.13e-08 58 30 9 196 3 MJ1287 Uncharacterized protein MJ1287 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58310 7.76e-08 58 36 4 117 3 MJ0900 Uncharacterized protein MJ0900 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q6F054 4.07e-06 52 26 7 198 3 pXO2-25 Uncharacterized protein pXO2-25/BXB0023/GBAA_pXO2_0023 Bacillus anthracis
P55395 4.13e-06 52 30 5 140 3 trbB Probable conjugal transfer protein TrbB Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q4J9L0 8.85e-06 52 31 3 116 1 flaI Archaeal flagellar ATPase motor FlaI Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
P54907 1.2e-05 50 30 3 117 3 trbB Conjugal transfer protein TrbB Rhizobium radiobacter
Q58191 0.00015 48 33 4 100 1 MJ0781 Uncharacterized protein MJ0781 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_06225
Feature type CDS
Gene pulE
Product Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
Location 39779 - 41302 (strand: 1)
Length 1524 (nucleotides) / 507 (amino acids)

Contig

Accession ZDB_683
Length 224720 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_258
Orthogroup size 8
N. genomes 7

Actions

Genomic region

Domains

PF00437 Type II/IV secretion system protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2804 Cell motility (N)
Intracellular trafficking, secretion, and vesicular transport (U)
Extracellular structures (W)		 NUW Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB

Protein Sequence

MQTAAPAPVTRTGGEEQLLLAEVHALCERNELMLIDYNPDAVRVAAAQQPRRDIVSAIRFLAGKRVDIELWHSEKLAYCRRNTPLPEPVLFPGVTPETNTPVSADTGNNCTGTGSPLPPPAPPPAQDPRRAPETDTWPAEQQSAAVRFVNQLIAGAIAKRASDIHIEPAQQGYRIRARIDGQLHTLNSPPPEISSEIIIRIKIISGLDIAEKRLPQDGQFEWLENNTRYAVRVATLPTIYGEKVVLRLLSTTQNLALEKSGLTARQLETLHTGLGSATGIILLTGPTGSGKTATLYGCLQYLNQNNRNICSVEDPVEIPLRGITQTQINPKIELGFAAILRALLRQDPDVIMVGEIRDKPTAEMAIKAAHTGHLVLSTLHTNSAEDTYSRLRQLGIDEYFMKTCIKLIIAQRLVRLLCPRCKTQKQKTETVILSSGKTHQLTPWQANGCDHCFSGYYGRTACFAFLTPQHTMSSSAGELPGSLFDAGIALAESGVTTLNEIYHMQDI

Flanking regions ( +/- flanking 50bp)

AATCTGTCTTGACGTCATCAAGTAACTACTGACATGAAAAGGAATTCATTATGCAAACAGCTGCACCCGCCCCTGTCACCCGTACCGGCGGGGAAGAACAACTCTTACTGGCTGAAGTTCATGCACTTTGTGAGCGCAATGAACTGATGCTGATTGACTATAACCCCGATGCCGTCAGAGTTGCTGCCGCACAGCAGCCGCGCAGAGATATTGTGTCTGCTATCCGGTTTCTGGCCGGTAAGCGGGTGGACATTGAATTGTGGCACAGTGAAAAACTGGCCTACTGCCGCCGCAATACCCCGCTGCCGGAGCCGGTCCTTTTCCCCGGCGTAACCCCGGAGACAAACACGCCGGTCTCTGCGGATACCGGCAATAACTGTACAGGTACCGGTTCACCACTGCCGCCGCCTGCCCCGCCTCCGGCGCAGGATCCCCGCCGGGCGCCGGAGACCGATACCTGGCCGGCAGAACAGCAATCCGCCGCTGTCCGGTTTGTTAACCAGCTGATTGCCGGAGCCATTGCCAAACGGGCCTCCGATATTCACATTGAACCGGCACAACAGGGTTACCGGATCCGTGCCAGAATCGACGGGCAACTGCATACGCTGAATTCACCGCCACCGGAAATTAGTAGTGAGATAATTATCCGCATCAAAATCATTTCCGGCCTCGATATTGCCGAAAAACGGTTACCTCAGGACGGGCAGTTTGAGTGGCTGGAAAATAACACCCGCTATGCTGTCCGTGTTGCCACACTGCCGACAATTTATGGTGAAAAAGTCGTACTGCGCCTGCTGAGCACCACGCAGAATCTGGCGCTGGAAAAATCCGGGCTGACGGCCCGGCAACTGGAAACGCTGCATACAGGTCTGGGCAGTGCCACCGGTATTATTTTGCTCACCGGTCCCACCGGCAGCGGAAAAACTGCCACACTCTACGGCTGCCTGCAGTACCTGAATCAGAATAACCGGAATATCTGCAGTGTTGAGGATCCGGTGGAAATCCCGCTGCGGGGGATCACCCAGACGCAGATAAACCCCAAAATTGAGCTGGGCTTCGCCGCCATCCTGCGGGCCCTGCTGCGCCAGGATCCGGATGTCATTATGGTGGGGGAAATCCGGGATAAACCCACCGCCGAGATGGCAATCAAAGCAGCTCATACCGGTCACCTGGTGCTGTCCACTCTGCATACAAACTCTGCGGAGGATACATATTCACGACTGAGGCAACTGGGTATTGATGAATATTTCATGAAAACCTGCATCAAACTGATCATTGCACAGCGTCTGGTCCGCCTGTTGTGTCCGCGCTGTAAAACGCAGAAACAGAAAACAGAAACCGTGATACTGAGCAGCGGAAAAACACATCAACTCACCCCGTGGCAGGCAAACGGTTGTGATCACTGCTTTTCAGGCTATTACGGGCGTACCGCCTGCTTTGCATTTCTCACTCCGCAACACACAATGTCTTCTTCTGCCGGTGAATTACCCGGTTCACTGTTTGATGCCGGTATCGCGCTGGCGGAATCAGGGGTAACCACACTCAATGAGATTTACCATATGCAGGATATTTAACATCCGCTGACCAACAGGAGTGATGCCATGCAAATTTACCGGCTGTATGA