Homologs in group_258

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04260 FBDBKF_04260 54.3 Morganella morganii S1 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
EHELCC_05550 EHELCC_05550 54.3 Morganella morganii S2 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
NLDBIP_05870 NLDBIP_05870 54.3 Morganella morganii S4 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
LHKJJB_02750 LHKJJB_02750 54.3 Morganella morganii S3 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
HKOGLL_06225 HKOGLL_06225 54.3 Morganella morganii S5 pulE Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB
F4V73_RS08705 F4V73_RS08705 55.8 Morganella psychrotolerans - ATPase, T2SS/T4P/T4SS family
PMI_RS18590 PMI_RS18590 28.9 Proteus mirabilis HI4320 virB11 P-type DNA transfer ATPase VirB11

Distribution of the homologs in the orthogroup group_258

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_258

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P36645 1.35e-114 343 48 5 378 3 hofB Protein transport protein HofB homolog Escherichia coli (strain K12)
Q6FF45 9.3e-101 312 43 8 384 1 pilB Type IV pilus assembly ATPase PilB Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P45792 1.52e-100 311 45 7 379 3 tapB Type IV pilus assembly protein TapB Aeromonas hydrophila
P37094 1.94e-97 303 42 7 378 3 pilF Type IV pilus assembly protein PilF Neisseria gonorrhoeae
P22608 1.23e-95 298 43 5 380 1 pilB Type IV pilus assembly ATPase PilB Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P37093 8.24e-94 292 39 5 375 1 epsE Type II secretion system ATPase E Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P31741 7.26e-92 287 40 7 378 3 exeE Type II secretion system protein E Aeromonas hydrophila
P45759 3.37e-91 285 40 4 374 1 gspE Putative type II secretion system protein E Escherichia coli (strain K12)
Q1D098 2.04e-90 285 41 8 384 1 pilB Type IV pilus assembly ATPase PilB Myxococcus xanthus (strain DK1622)
P15645 2.13e-90 283 41 6 374 3 pulE Type II secretion system protein E Klebsiella pneumoniae
Q00512 5.02e-90 282 40 5 374 1 xcpR Type II secretion system protein E Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q01566 4.9e-89 279 40 5 378 3 outE Type II secretion system protein E Dickeya dadantii (strain 3937)
P31702 2.19e-88 278 40 5 378 1 outE Type II secretion system protein E Dickeya chrysanthemi
P31703 2.79e-87 275 44 4 321 3 outE Type II secretion system protein E Pectobacterium carotovorum subsp. carotovorum
Q5SLC9 8.68e-87 283 42 5 329 1 pilB Type IV pilus assembly ATPase PilB Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
P44622 1.24e-85 270 42 10 366 3 hofB Protein transport protein HofB homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9I5N9 3.86e-84 266 39 6 375 2 hxcR Type II secretion system protein HxcR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q6FA79 2.52e-81 262 40 9 382 3 tfpB Type IV pilus assembly ATPase TfpB Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P31742 3.81e-81 261 38 8 380 1 xpsE Type II secretion system protein E Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
P25953 2.1e-63 209 39 3 275 1 comGA Competence protein ComGA Bacillus subtilis (strain 168)
Q9K919 1.14e-52 181 40 6 294 3 comGA Competence protein ComGA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q8DN86 1.86e-37 140 29 5 269 2 comGA Competence protein ComGA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P29480 1.24e-35 139 30 11 335 1 tcpT Toxin coregulated pilus biosynthesis protein T Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P52052 2.76e-32 126 36 10 253 1 yggR Uncharacterized protein YggR Escherichia coli (strain K12)
Q06581 1.32e-29 120 36 8 205 3 pilT Twitching motility protein Neisseria gonorrhoeae
P24559 1.2e-28 117 38 5 159 1 pilT Type IV pilus retractation ATPase PilT Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
G3XCX3 6.12e-19 90 36 7 174 1 pilU Type IV pilus ATPase PilU Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q58683 4.34e-14 75 30 8 199 3 MJ1287 Uncharacterized protein MJ1287 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58310 5.54e-14 76 40 5 126 3 MJ0900 Uncharacterized protein MJ0900 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q4J9L0 1.98e-11 68 36 5 125 1 flaI Archaeal flagellar ATPase motor FlaI Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
P0C534 1.06e-08 59 33 6 137 3 virB11 Type IV secretion system protein VirB11 Brucella abortus biovar 1 (strain 9-941)
Q2YJ82 1.06e-08 59 33 6 137 3 virB11 Type IV secretion system protein VirB11 Brucella abortus (strain 2308)
Q8YDY9 1.08e-08 59 33 6 137 3 virB11 Type IV secretion system protein VirB11 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q8FXK7 3.81e-08 58 32 6 137 1 virB11 Type IV secretion system protein VirB11 Brucella suis biovar 1 (strain 1330)
Q6F054 3.97e-08 58 30 3 127 3 pXO2-25 Uncharacterized protein pXO2-25/BXB0023/GBAA_pXO2_0023 Bacillus anthracis
P54907 1.84e-06 52 30 5 140 3 trbB Conjugal transfer protein TrbB Rhizobium radiobacter
P9WMT3 5.44e-06 51 34 6 122 2 Rv3659c Putative conjugal transfer protein Rv3659c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMT2 5.44e-06 51 34 6 122 3 MT3759 Putative conjugal transfer protein MT3759 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P55395 2.4e-05 49 29 5 141 3 trbB Probable conjugal transfer protein TrbB Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q6FYW0 6.82e-05 48 35 5 121 3 virB11 Type IV secretion system protein VirB11 Bartonella quintana (strain Toulouse)
Q9RNC7 0.00012 47 34 5 123 1 virB11 Type IV secretion system protein VirB11 Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1)
P07169 0.000243 46 33 5 121 3 virB11 Protein VirB11 Agrobacterium fabrum (strain C58 / ATCC 33970)
Q7WDT5 0.000498 45 35 6 120 3 ptlH Type IV secretion system protein PtlH homolog Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
Q7VSX3 0.000521 45 35 6 120 1 ptlH Type IV secretion system protein PtlH Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Q7W2T7 0.000521 45 35 6 120 3 ptlH Type IV secretion system protein PtlH homolog Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10105
Feature type CDS
Gene -
Product ATPase, T2SS/T4P/T4SS family
Location 2207887 - 2208990 (strand: 1)
Length 1104 (nucleotides) / 367 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_258
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00437 Type II/IV secretion system protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2804 Cell motility (N)
Intracellular trafficking, secretion, and vesicular transport (U)
Extracellular structures (W)		 NUW Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB

Protein Sequence

MNNTIHTATEFIEQLLRHSLAQRVSDLHLEPQQNSLRIRARIDNHLVLFSPPDNQLANEILTRLKILANINIAEKRLPQDGQFNWSYQKNNYSIRVATLPTLYGEKIVLRLMNNLQQPQLAQLGFQTIHLTLLKKYLTQPQGMILVTGPTGSGKTLTLYSCLQYLNKDNRNINSIEDPIELPLHGINQTQITEKAGITFATILRALLRQDPDVIMIGEIRDQQTAEIAIKAAQTGHLVLSTLHTNSTQATLARLANLGIAKDLIDSCVKLIISQRLVRCLCSNCKYPSPEQKNFIINNQQIILPNWQATGCQFCYSGYKGRTAIYDCFELAKQSLPSPYALFNSGIELIKKGITSLDEVYQVVGDIE

Flanking regions ( +/- flanking 50bp)

GTTTCTAGCCCTTACCATCCATAAATCATTTATCGTAAAAAAGAGCTTTCATGAATAATACTATCCATACAGCAACAGAGTTTATTGAGCAATTGTTACGTCACAGCCTTGCTCAACGTGTTTCTGATCTTCATTTAGAGCCACAACAAAATAGCCTGAGAATTCGCGCGAGAATTGATAATCATCTAGTATTATTTTCTCCCCCTGACAATCAATTAGCTAACGAGATCCTGACACGTTTAAAAATCCTCGCGAATATTAATATTGCCGAAAAACGCCTACCACAAGATGGTCAATTTAATTGGTCTTACCAGAAAAACAATTATTCAATACGTGTTGCGACACTTCCTACTTTATATGGAGAAAAAATAGTTTTACGGCTCATGAATAATCTGCAACAGCCACAATTAGCACAGTTAGGTTTTCAAACAATTCACCTAACACTATTAAAAAAATATCTTACTCAACCTCAGGGAATGATTTTAGTCACCGGCCCCACAGGGAGTGGTAAAACTTTAACACTCTATAGTTGTTTACAATATTTAAATAAAGATAATCGTAATATTAATAGTATTGAAGATCCTATTGAGTTACCTCTCCATGGCATTAATCAAACACAAATAACAGAAAAAGCTGGTATTACTTTTGCAACAATATTACGGGCGCTATTACGCCAAGATCCCGATGTTATTATGATAGGTGAAATACGTGATCAACAAACAGCAGAAATAGCAATAAAAGCGGCACAAACAGGCCACCTAGTTTTATCAACACTGCATACTAACTCTACCCAAGCAACACTCGCCCGTTTGGCTAATTTAGGCATCGCAAAAGATTTAATCGACTCTTGTGTAAAATTAATTATTTCTCAACGTTTAGTTCGTTGCTTATGTAGCAACTGTAAATACCCATCACCTGAACAGAAAAATTTCATTATTAATAATCAACAAATTATATTACCCAATTGGCAAGCAACAGGTTGTCAATTTTGTTATTCCGGCTACAAAGGCAGAACAGCTATTTATGATTGTTTTGAACTTGCCAAGCAATCACTCCCCTCACCTTACGCACTATTTAACTCAGGTATTGAACTGATAAAAAAGGGGATCACGTCTTTAGATGAAGTTTATCAAGTAGTCGGAGATATTGAATGAAATTACATTTTATCTATCGCTATAATGCATTAACTTATCAAGGAAAATGG