Homologs in group_3689

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3 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS19585 PMI_RS19585 37.0 Proteus mirabilis HI4320 - RHS domain-containing protein
PMI_RS19600 PMI_RS19600 50.0 Proteus mirabilis HI4320 - hypothetical protein
PMI_RS05220 PMI_RS05220 47.9 Proteus mirabilis HI4320 - PAAR domain-containing protein

Distribution of the homologs in the orthogroup group_3689

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3689

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
E0SAK8 1.53e-05 45 35 2 73 1 rhsA Probable deoxyribonuclease RhsA Dickeya dadantii (strain 3937)
E0SIS2 2.18e-05 44 35 2 73 1 rhsB Probable deoxyribonuclease RhsB Dickeya dadantii (strain 3937)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS06955
Feature type CDS
Gene -
Product PAAR domain-containing protein
Location 1441982 - 1442275 (strand: -1)
Length 294 (nucleotides) / 97 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3689
Orthogroup size 4
N. genomes 2

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Genomic region

Domains

PF05488 PAAR motif

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4104 Intracellular trafficking, secretion, and vesicular transport (U) U Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG041187 PAAR domain-containing protein VF1268 Effector delivery system

Protein Sequence

MKPAARTGDMHLCPGQTPPVPIPHVGGPVLPAPSTILIGGLPAATLGQMCVCTGIPDVIATGSMTVLLNNKPAARLGDSTAHGGTIISGMPSVLIGG

Flanking regions ( +/- flanking 50bp)

TACCCGCATTTTATCTCTCTGGGAGTGAAAATTGCCCGCGGGGAGAGTGTATGAAACCCGCGGCGCGAACCGGCGATATGCATTTGTGTCCGGGACAAACGCCCCCGGTTCCGATCCCGCATGTGGGCGGACCGGTTCTGCCCGCGCCGTCCACCATTCTGATTGGCGGATTACCGGCAGCAACACTCGGGCAGATGTGCGTGTGCACCGGGATACCTGATGTTATCGCTACAGGCAGTATGACGGTACTTTTGAATAACAAACCCGCGGCCCGTCTGGGAGACAGCACGGCGCACGGCGGCACAATTATATCCGGTATGCCTTCAGTGCTTATCGGGGGATAGTGTTATTTTATCAATAAAAAGGGAATTTTATGGCAGGAAATATAATGGCG