COG4104


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4104, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 16 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG4104 is associated with 16 different proteins (see tab "Protein list" and "Profile")
The 16 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_101 FBDBKF_16695 20256 20522 -1 PAAR domain-containing protein Morganella morganii S1
1 group_101 FBDBKF_16705 21746 22012 -1 PAAR domain-containing protein Morganella morganii S1
2 group_101 EHELCC_10755 191759 192025 1 PAAR domain-containing protein Morganella morganii S2
3 group_101 EHELCC_10765 193249 193515 1 PAAR domain-containing protein Morganella morganii S2
4 group_101 NLDBIP_11100 170030 170296 1 PAAR domain-containing protein Morganella morganii S4
5 group_101 NLDBIP_11110 171520 171786 1 PAAR domain-containing protein Morganella morganii S4
6 group_101 LHKJJB_10245 19742 20008 -1 PAAR domain-containing protein Morganella morganii S3
7 group_101 LHKJJB_10255 21232 21498 -1 PAAR domain-containing protein Morganella morganii S3
8 group_101 HKOGLL_16410 19751 20017 -1 PAAR domain-containing protein Morganella morganii S5
9 group_101 HKOGLL_16420 21241 21507 -1 PAAR domain-containing protein Morganella morganii S5
10 group_101 F4V73_RS02385 507517 507774 1 PAAR domain-containing protein Morganella psychrotolerans
11 group_3689 F4V73_RS06955 1441982 1442275 -1 PAAR domain-containing protein Morganella psychrotolerans
12 group_3731 F4V73_RS11095 357619 358773 1 PAAR domain-containing protein Morganella psychrotolerans
13 group_3731 F4V73_RS16800 185071 186486 -1 PAAR domain-containing protein Morganella psychrotolerans
14 group_3731 PMI_RS06425 1409271 1409543 -1 PAAR domain-containing protein Proteus mirabilis HI4320
15 group_101 PMI_RS14810 3286944 3287213 1 PAAR domain-containing protein Proteus mirabilis HI4320