Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected COG entry COG4104
Protein list: lists the 16 occurences of the COG entry within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the COG entry of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entry has been clustered.
Orthogroups are shown in red if they are annotated with that particular COG entry in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and COG entry prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entry.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entry prediction.
Description
| Description | Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion |
|---|---|
| Function(s) descr. | Intracellular trafficking, secretion, and vesicular transport (U) |
Occurence in the database
| COG4104 is associated with 16 different proteins |
| The 16 proteins are classified into 4 different orthogroup(s) |
| Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
|---|---|---|---|---|---|---|---|---|
| 0 | group_132 | FBDBKF_16695 | 20256 | 20522 | -1 | PAAR domain-containing protein | Morganella morganii S1 | |
| 1 | group_132 | FBDBKF_16705 | 21746 | 22012 | -1 | PAAR domain-containing protein | Morganella morganii S1 | |
| 2 | group_132 | EHELCC_10755 | 191759 | 192025 | 1 | PAAR domain-containing protein | Morganella morganii S2 | |
| 3 | group_132 | EHELCC_10765 | 193249 | 193515 | 1 | PAAR domain-containing protein | Morganella morganii S2 | |
| 4 | group_132 | NLDBIP_11100 | 170030 | 170296 | 1 | PAAR domain-containing protein | Morganella morganii S4 | |
| 5 | group_132 | NLDBIP_11110 | 171520 | 171786 | 1 | PAAR domain-containing protein | Morganella morganii S4 | |
| 6 | group_132 | LHKJJB_10245 | 19742 | 20008 | -1 | PAAR domain-containing protein | Morganella morganii S3 | |
| 7 | group_132 | LHKJJB_10255 | 21232 | 21498 | -1 | PAAR domain-containing protein | Morganella morganii S3 | |
| 8 | group_132 | HKOGLL_16410 | 19751 | 20017 | -1 | PAAR domain-containing protein | Morganella morganii S5 | |
| 9 | group_132 | HKOGLL_16420 | 21241 | 21507 | -1 | PAAR domain-containing protein | Morganella morganii S5 | |
| 10 | group_3735 | F4V73_RS02385 | 507517 | 507774 | 1 | PAAR domain-containing protein | Morganella psychrotolerans | |
| 11 | group_3643 | F4V73_RS06955 | 1441982 | 1442275 | -1 | PAAR domain-containing protein | Morganella psychrotolerans | |
| 12 | group_3686 | F4V73_RS11095 | 357619 | 358773 | 1 | PAAR domain-containing protein | Morganella psychrotolerans | |
| 13 | group_3686 | F4V73_RS16800 | 185071 | 186486 | -1 | PAAR domain-containing protein | Morganella psychrotolerans | |
| 14 | group_3686 | PMI_RS06425 | 1409271 | 1409543 | -1 | PAAR domain-containing protein | Proteus mirabilis HI4320 | |
| 15 | group_3735 | PMI_RS14810 | 3286944 | 3287213 | 1 | PAAR domain-containing protein | Proteus mirabilis HI4320 |
