Homologs in group_41

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01635 FBDBKF_01635 92.5 Morganella morganii S1 sdaA L-serine ammonia-lyase
FBDBKF_06960 FBDBKF_06960 73.6 Morganella morganii S1 sdaA L-serine ammonia-lyase
EHELCC_02105 EHELCC_02105 92.5 Morganella morganii S2 sdaA L-serine ammonia-lyase
EHELCC_04010 EHELCC_04010 73.6 Morganella morganii S2 sdaA L-serine ammonia-lyase
NLDBIP_01355 NLDBIP_01355 92.5 Morganella morganii S4 sdaA L-serine ammonia-lyase
NLDBIP_04010 NLDBIP_04010 73.6 Morganella morganii S4 sdaA L-serine ammonia-lyase
LHKJJB_00680 LHKJJB_00680 92.5 Morganella morganii S3 sdaA L-serine ammonia-lyase
LHKJJB_09840 LHKJJB_09840 73.6 Morganella morganii S3 sdaA L-serine ammonia-lyase
HKOGLL_00720 HKOGLL_00720 92.5 Morganella morganii S5 sdaA L-serine ammonia-lyase
HKOGLL_09135 HKOGLL_09135 73.6 Morganella morganii S5 sdaA L-serine ammonia-lyase
F4V73_RS01155 F4V73_RS01155 74.0 Morganella psychrotolerans - L-serine ammonia-lyase
PMI_RS03300 PMI_RS03300 72.0 Proteus mirabilis HI4320 - L-serine ammonia-lyase
PMI_RS07845 PMI_RS07845 83.2 Proteus mirabilis HI4320 - L-serine ammonia-lyase

Distribution of the homologs in the orthogroup group_41

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_41

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P16095 0.0 765 80 0 454 1 sdaA L-serine dehydratase 1 Escherichia coli (strain K12)
P30744 0.0 686 72 1 455 2 sdaB L-serine dehydratase 2 Escherichia coli (strain K12)
P71349 0.0 666 70 1 455 3 sdaA L-serine dehydratase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P42630 0.0 644 69 0 453 1 tdcG L-serine dehydratase TdcG Escherichia coli (strain K12)
O86564 5.48e-162 468 51 7 458 3 sdaA L-serine dehydratase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P9WGT5 3.68e-132 392 50 6 456 1 sdaA L-serine dehydratase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGT4 3.68e-132 392 50 6 456 3 sdaA L-serine dehydratase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P66774 3.68e-132 392 50 6 456 3 sdaA L-serine dehydratase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P56072 1.4e-129 385 43 8 458 3 sdaA L-serine dehydratase Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZMU7 1.84e-129 385 44 8 458 3 sdaA L-serine dehydratase Helicobacter pylori (strain J99 / ATCC 700824)
O34607 1.5e-40 150 38 8 282 3 sdaAA Probable L-serine dehydratase, alpha chain Bacillus subtilis (strain 168)
P33073 3.25e-27 113 34 8 285 1 sdhA L-serine dehydratase, alpha chain Peptoniphilus asaccharolyticus
Q48838 1.45e-25 107 39 2 181 3 sdhA Probable L-serine dehydratase, alpha chain (Fragment) Latilactobacillus sakei
O34635 8.13e-08 56 36 8 151 3 sdaAB Probable L-serine dehydratase, beta chain Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03975
Feature type CDS
Gene -
Product L-serine ammonia-lyase
Location 843552 - 844916 (strand: -1)
Length 1365 (nucleotides) / 454 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_41
Orthogroup size 14
N. genomes 7

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Genomic region

Domains

PF03313 Serine dehydratase alpha chain
PF03315 Serine dehydratase beta chain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1760 Amino acid transport and metabolism (E) E L-serine deaminase

Kegg Ortholog Annotation(s)

Protein Sequence

MISVFDMFKVGIGPSSSHTVGPMKAGKQFVDELVEKGLISRATRVSVDVYGSLSLTGKGHHTDIAIIMGLAGNLPATVDIDAIQGFIANVSETEKLALANGQQTVDFPLEGGMNFHTGNLPLHENGMSITAFAGNDELFTKTYYSVGGGFIVDAEHFGQDNANETPVSYPYASAEELLKHCHETGLSVSSLMMKNELDLHTKADIDAYFADIYKTMTDCIAHGLETEGILPGPLRVPRRAAALNRLINSTGKLSNDPMQVIDLVNMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYYDSCIEKVTPDIYLRYFLASGAVGILYKMNASISGAEVGCQGEVGVACSMAAAGLTEILGGSPEQVCIAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAINASRMALRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIKVQCD

Flanking regions ( +/- flanking 50bp)

ACGCGCTTTACAATAAATCACTATTACATTGTTTTTTTAAGGAGTCTGACGTGATTAGCGTTTTCGACATGTTTAAAGTGGGCATTGGCCCTTCCAGCTCTCACACCGTAGGGCCGATGAAAGCCGGGAAGCAGTTTGTTGATGAATTAGTTGAAAAAGGACTGATCTCACGCGCAACCCGCGTCTCCGTTGATGTCTACGGCTCACTCTCCTTAACAGGGAAAGGTCATCATACTGATATCGCTATCATCATGGGTCTGGCGGGTAACTTACCGGCAACCGTGGATATTGATGCTATTCAGGGCTTTATCGCAAATGTCAGTGAAACAGAAAAACTGGCACTGGCAAATGGTCAGCAAACCGTTGATTTTCCGCTTGAAGGCGGGATGAATTTCCATACCGGTAACCTGCCCCTGCATGAAAACGGCATGAGCATCACTGCATTTGCCGGTAACGACGAACTGTTCACAAAAACCTATTACTCCGTCGGCGGTGGTTTTATCGTCGATGCGGAACATTTCGGTCAGGATAACGCCAATGAAACACCGGTATCCTATCCGTACGCCAGTGCTGAAGAGTTGCTGAAGCACTGCCATGAGACCGGTCTGTCTGTCTCCTCTCTGATGATGAAAAATGAGCTGGATCTGCACACCAAAGCAGACATTGACGCGTATTTTGCTGATATCTATAAAACCATGACCGACTGTATCGCGCATGGTCTGGAAACCGAAGGCATTCTGCCGGGTCCGTTGCGTGTACCACGCCGTGCAGCAGCACTGAACCGACTGATTAATTCCACCGGTAAACTGTCAAATGACCCGATGCAGGTTATTGACCTGGTCAATATGTTTGCACTGGCGGTCAATGAAGAAAATGCCGCCGGCGGACGTGTTGTGACGGCACCAACCAACGGCGCCTGCGGGATCGTGCCTGCAGTACTGGCTTACTACGACAGTTGCATTGAAAAAGTTACCCCGGATATCTATCTCCGTTACTTCCTCGCCAGCGGTGCGGTCGGCATTCTGTATAAAATGAATGCATCGATTTCAGGCGCAGAAGTCGGTTGTCAGGGAGAAGTCGGCGTTGCCTGTTCAATGGCAGCTGCGGGACTGACTGAAATTCTCGGCGGCAGCCCGGAGCAGGTTTGTATCGCGGCTGAAATTGGCATGGAACATAACCTGGGATTAACCTGTGACCCTGTCGCCGGACAAGTTCAGGTGCCGTGTATTGAGCGTAACGCGATTGCGTCTGTGAAAGCGATTAATGCCTCGCGGATGGCATTGCGCCGCACAAGTGCGCCGCGTGTCTCACTCGATAAGGTTATCGAAACCATGTATGAGACAGGCAAAGACATGAATGCCAAATACCGCGAGACATCGCGCGGTGGCCTGGCGATTAAAGTTCAGTGTGACTGAACCGGACCATGTTGTGATCTGATCCGCAAAACATAATTTTCAGACATTAA