Homologs in group_1607

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10520 FBDBKF_10520 27.8 Morganella morganii S1 fimA Pilin (type 1 fimbrial protein)
EHELCC_14855 EHELCC_14855 27.8 Morganella morganii S2 fimA Pilin (type 1 fimbrial protein)
NLDBIP_14685 NLDBIP_14685 27.8 Morganella morganii S4 fimA Pilin (type 1 fimbrial protein)
LHKJJB_14660 LHKJJB_14660 27.8 Morganella morganii S3 fimA Pilin (type 1 fimbrial protein)
HKOGLL_13280 HKOGLL_13280 27.8 Morganella morganii S5 fimA Pilin (type 1 fimbrial protein)
F4V73_RS14230 F4V73_RS14230 25.6 Morganella psychrotolerans - fimbrial protein

Distribution of the homologs in the orthogroup group_1607

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1607

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37921 8.55e-05 44 24 5 190 1 fimA Type-1 fimbrial protein, A chain Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P22595 8.83e-05 44 28 3 113 3 fimA Type-1 fimbrial protein subunit Serratia marcescens

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01850
Feature type CDS
Gene -
Product fimbrial protein
Location 404376 - 404924 (strand: 1)
Length 549 (nucleotides) / 182 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1607
Orthogroup size 7
N. genomes 6

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Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Protein Sequence

MKLKYAVLPAAVAMLFSAAASAADTVDTVHDQGRIYFLGSVKAPTCVVNDGQKNFTVMLGDFEISSFPQSDTQVRGNEAVQIKLTECTGQWANLRLEATDRYNDSMIKFAETSNSAKGLALGLKSTDDAAAPFIKVDGKENNWQPIQAKTATYKFYPFIYQIADIVESGKLRAQVLYTIRYS

Flanking regions ( +/- flanking 50bp)

TTAAAACAGTGTTGTTAAATACTACGGTTATATACTATAAAGGAATTGTTATGAAACTGAAATATGCTGTTTTACCTGCTGCTGTTGCTATGTTATTCAGTGCTGCTGCATCTGCTGCTGATACAGTCGATACTGTACACGACCAGGGTCGTATTTATTTTCTTGGCTCAGTTAAAGCACCTACCTGTGTGGTTAACGACGGACAGAAAAACTTTACTGTGATGTTAGGTGATTTTGAAATATCCAGCTTTCCACAGTCTGACACTCAGGTTCGCGGAAATGAAGCAGTTCAAATTAAACTGACAGAATGTACCGGTCAGTGGGCAAATTTGAGACTGGAAGCGACTGATCGCTATAATGATAGCATGATTAAATTTGCTGAAACCAGTAATAGTGCGAAAGGTCTGGCTCTTGGTTTAAAATCTACAGATGACGCGGCTGCACCATTTATCAAAGTAGACGGTAAAGAAAATAACTGGCAGCCAATCCAGGCAAAAACAGCAACGTATAAATTCTATCCATTTATTTACCAGATAGCTGATATTGTTGAGTCCGGTAAACTCAGAGCACAAGTGTTATATACCATCAGATACAGCTGATCGATATAGATTTTCATAGGGTAGCGAATGCTACCCTATAAATAATAAAT