Homologs in group_148

Help

9 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01360 FBDBKF_01360 19.9 Morganella morganii S1 impA ImpA N-terminal domain-containing protein
EHELCC_00185 EHELCC_00185 19.9 Morganella morganii S2 impA ImpA N-terminal domain-containing protein
NLDBIP_03275 NLDBIP_03275 19.9 Morganella morganii S4 impA ImpA N-terminal domain-containing protein
LHKJJB_04790 LHKJJB_04790 19.9 Morganella morganii S3 impA ImpA N-terminal domain-containing protein
HKOGLL_02255 HKOGLL_02255 19.9 Morganella morganii S5 impA ImpA N-terminal domain-containing protein
F4V73_RS02310 F4V73_RS02310 23.0 Morganella psychrotolerans - VasL domain-containing protein
F4V73_RS16725 F4V73_RS16725 19.4 Morganella psychrotolerans - VasL domain-containing protein
F4V73_RS16750 F4V73_RS16750 17.6 Morganella psychrotolerans tssA type VI secretion system protein TssA
PMI_RS03615 PMI_RS03615 20.1 Proteus mirabilis HI4320 - VasL domain-containing protein

Distribution of the homologs in the orthogroup group_148

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_148

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I750 4.08e-11 66 24 9 334 1 tssA1 Type VI secretion system component TssA1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00100
Feature type CDS
Gene -
Product type VI secretion system ImpA family N-terminal domain-containing protein
Location 24760 - 25746 (strand: -1)
Length 987 (nucleotides) / 328 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_148
Orthogroup size 10
N. genomes 7

Actions

Genomic region

Domains

PF06812 ImpA, N-terminal, type VI secretion system

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3515 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component TssA1/VasJ/EvfE, contains ImpA_N domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11902 type VI secretion system protein ImpA Biofilm formation - Pseudomonas aeruginosa -

Protein Sequence

MKNISDQDIYGVEFDPLFSEVESILTQFDESANPLSGEDEQPQINWIAVSEKTNELLYQYKDLRVLLWSLRANLYIDGISSLFSGIQNLAELVENHSDLLYPKSEDGDIRSSHAAALGWLSAPQCISELKLTKITADHNYTLNDIASIDSNDIRENYANSLSALLTSLNNNEKLNIAHFSEQFSQVSLALDKIEQYANHYTDGYILDCSALKQFLTRCLSIITQLMSFSQVSDDTGIQETEYPENNSELPVQTGLKGPVKVTDITLRSRQDVLIMLDCILDYFQRYEPSHPVPIFIQRSKQMIGMDFASIVEKLLPESISTLQQFTGK

Flanking regions ( +/- flanking 50bp)

ATGAAGGCTAGGATTGCATTAAACAGATCTGTAACCACATTGGTGACGAAATGAAAAACATAAGCGACCAAGATATTTATGGTGTGGAATTTGACCCTCTTTTTAGTGAGGTTGAATCTATTCTTACTCAGTTCGATGAGTCTGCCAATCCCTTATCCGGAGAAGATGAACAACCACAAATTAACTGGATCGCCGTCTCAGAAAAAACCAATGAGTTATTATATCAATATAAAGACTTACGTGTTTTATTATGGTCACTACGTGCAAATTTGTATATTGACGGGATATCCTCTTTATTCAGCGGGATTCAAAACCTGGCTGAACTGGTAGAAAATCACAGTGACTTACTGTATCCGAAATCAGAAGACGGTGATATTCGCAGTAGTCATGCTGCGGCTCTCGGATGGTTATCTGCTCCGCAATGTATTTCAGAATTAAAACTGACAAAAATCACTGCTGACCATAATTATACGCTTAATGATATTGCATCAATCGACAGCAATGATATACGCGAAAACTATGCTAATTCATTAAGCGCACTTCTGACATCGCTGAATAACAATGAAAAATTAAATATAGCCCATTTTTCAGAACAATTCTCACAGGTCAGTCTGGCGCTTGATAAAATTGAGCAATATGCAAACCACTATACAGATGGCTATATCCTTGATTGTAGTGCCTTAAAGCAGTTTCTGACACGCTGCCTCAGTATCATTACACAACTTATGAGTTTTTCTCAGGTGAGTGACGATACCGGAATACAGGAAACAGAATATCCTGAAAATAATTCAGAACTACCGGTACAGACCGGGCTGAAAGGGCCGGTAAAAGTGACCGATATTACATTACGCTCCCGGCAGGACGTATTAATTATGCTGGATTGTATCCTTGATTATTTTCAGCGCTATGAACCAAGCCATCCTGTTCCTATTTTTATTCAGCGATCAAAACAAATGATTGGTATGGATTTCGCGTCAATCGTTGAAAAACTCCTTCCGGAGTCAATCAGTACCTTACAACAATTTACCGGGAAATAATGTTTCCTATATTGCAATGAGGATTGTGAGATGGCCAAAGATATCAGCTC