COG3515


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3515, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Type VI protein secretion system component TssA1/VasJ/EvfE, contains ImpA_N domain
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG3515 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_148 FBDBKF_01360 267489 268844 1 impA ImpA N-terminal domain-containing protein Morganella morganii S1
1 group_148 EHELCC_00185 40024 41379 -1 impA ImpA N-terminal domain-containing protein Morganella morganii S2
2 group_148 NLDBIP_03275 638757 640112 1 impA ImpA N-terminal domain-containing protein Morganella morganii S4
3 group_148 LHKJJB_04790 245998 247353 1 impA ImpA N-terminal domain-containing protein Morganella morganii S3
4 group_148 HKOGLL_02255 40229 41584 -1 impA ImpA N-terminal domain-containing protein Morganella morganii S5
5 group_148 F4V73_RS00100 24760 25746 -1 type VI secretion system ImpA family N-terminal domain-containing protein Morganella psychrotolerans
6 group_148 F4V73_RS02310 487204 488550 -1 VasL domain-containing protein Morganella psychrotolerans
7 group_553 F4V73_RS02320 492131 493591 -1 tssA type VI secretion system protein TssA Morganella psychrotolerans
8 group_4067 F4V73_RS07035 1460550 1461836 -1 type VI secretion system ImpA family N-terminal domain-containing protein Morganella psychrotolerans
9 group_4103 F4V73_RS09405 1983125 1984249 1 type VI secretion system ImpA family N-terminal domain-containing protein Morganella psychrotolerans
10 group_148 F4V73_RS16725 167536 168903 -1 VasL domain-containing protein Morganella psychrotolerans
11 group_148 F4V73_RS16750 172757 174364 -1 tssA type VI secretion system protein TssA Morganella psychrotolerans
12 group_148 PMI_RS03615 810082 811425 -1 VasL domain-containing protein Proteus mirabilis HI4320
13 group_553 PMI_RS03625 815026 816489 -1 tssA type VI secretion system protein TssA Proteus mirabilis HI4320