Homologs in group_61

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12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01330 FBDBKF_01330 26.0 Morganella morganii S1 icmH type IVB secretion system protein IcmH/DotU
EHELCC_00215 EHELCC_00215 26.0 Morganella morganii S2 icmH type IVB secretion system protein IcmH/DotU
NLDBIP_03245 NLDBIP_03245 26.0 Morganella morganii S4 icmH type IVB secretion system protein IcmH/DotU
LHKJJB_04760 LHKJJB_04760 26.0 Morganella morganii S3 icmH type IVB secretion system protein IcmH/DotU
HKOGLL_02285 HKOGLL_02285 26.0 Morganella morganii S5 icmH type IVB secretion system protein IcmH/DotU
F4V73_RS02340 F4V73_RS02340 25.8 Morganella psychrotolerans icmH type IVB secretion system protein IcmH/DotU
F4V73_RS06975 F4V73_RS06975 30.6 Morganella psychrotolerans icmH type IVB secretion system protein IcmH/DotU
F4V73_RS09340 F4V73_RS09340 31.7 Morganella psychrotolerans tssL type VI secretion system protein TssL, long form
F4V73_RS09425 F4V73_RS09425 27.0 Morganella psychrotolerans - OmpA family protein
F4V73_RS16850 F4V73_RS16850 32.0 Morganella psychrotolerans - OmpA family protein
F4V73_RS16855 F4V73_RS16855 19.2 Morganella psychrotolerans tssL type VI secretion system protein TssL, short form
PMI_RS03645 PMI_RS03645 26.7 Proteus mirabilis HI4320 icmH type IVB secretion system protein IcmH/DotU

Distribution of the homologs in the orthogroup group_61

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_61

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P46827 2.06e-10 64 31 4 148 3 ytxE Uncharacterized 24.6 kDa protein in ccpA 3'region Priestia megaterium
P28612 3.66e-08 58 31 4 132 1 motB Motility protein B Bacillus subtilis (strain 168)
P39064 1.04e-07 56 25 2 136 3 ytxE Uncharacterized protein YtxE Bacillus subtilis (strain 168)
P13794 6.15e-05 48 35 5 106 1 oprF Outer membrane porin F Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P37726 6.78e-05 48 36 3 95 1 oprF Outer membrane porin F Pseudomonas fluorescens
P38369 0.000185 47 33 3 93 3 tpn50 Outer membrane protein Tpn50 Treponema pallidum (strain Nichols)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00030
Feature type CDS
Gene icmH
Product type IVB secretion system protein IcmH/DotU
Location 8452 - 10029 (strand: -1)
Length 1578 (nucleotides) / 525 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_61
Orthogroup size 13
N. genomes 7

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Genomic region

Domains

PF00691 OmpA family
PF09850 Type VI secretion system protein DotU

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3455 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component TssL/VasF/DotU

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11892 type VI secretion system protein ImpK Bacterial secretion system -

Protein Sequence

MNEFERQIRNAISTARTGVKRAEHSITNPLWQAKSTVASLGAIIPAGMRGSGNSHFPDEEMPGIPAANEDPPDTALRHTREYEKHNPIPPLRPAQHPAGRQGRRPAEQSGALSGIWHNPYISAGMPLLLQVEWFRNEPQTDFVYARLQIVRKLEFFRNDLRKQGFPPEEINHLSYLICTYTDGLFNDLLKEETTGLSLLVEFHKDAWGGENCFEHLKSYITNPSDNRDILEFYYFILSMGFEGKYRMLERGPVLLMDLRNHLSNLLYMQNTTEYLSDVTAETVRPQRRRFITALRILISGLIIAVIAYGISAWYLHEQARQIRNDILAWVPPEPRKINIMETLPNPLTQILSEGWLEVRKDPRGWLLIFTSDGAFLTGKSELTEDFLSKRNIERLGAALAPWPGDLEVIGHTDGTPFRKTSVNNNLKLSENRAVVVADILRTNTTINETHNREITALGRGENEPIADNTTDDGRKRNRRVDILWKIGKRDAEQAMQGYQGSGAPATLTDVTYPSAGDNDNSDLAE

Flanking regions ( +/- flanking 50bp)

TTTCCGGGATTACGTTTTGAGGCATGGGGCTTACGTCAGGGGAGAGTAGGATGAATGAATTCGAACGCCAAATAAGAAATGCAATATCCACGGCCCGTACCGGCGTGAAACGGGCCGAACATTCAATAACCAACCCGTTATGGCAGGCTAAAAGTACCGTCGCGTCATTAGGTGCGATTATACCCGCCGGTATGCGGGGATCAGGAAACAGCCATTTTCCGGATGAGGAGATGCCGGGGATCCCCGCTGCAAATGAAGATCCGCCTGATACCGCTCTCCGCCATACCCGGGAATATGAAAAACATAATCCGATCCCGCCTCTGCGTCCGGCACAGCACCCGGCAGGCAGGCAGGGACGGCGCCCGGCAGAACAAAGCGGTGCCTTGTCCGGTATCTGGCATAACCCCTATATTTCAGCGGGGATGCCACTGCTTTTACAGGTCGAATGGTTCCGTAACGAGCCACAAACTGACTTTGTTTACGCGCGTCTGCAAATTGTGCGCAAACTGGAATTTTTCCGCAATGACCTGCGTAAACAAGGGTTTCCGCCGGAAGAAATTAATCATTTATCTTATCTTATCTGCACCTATACCGACGGGCTGTTCAATGACCTGCTGAAAGAGGAAACCACCGGCCTGAGCCTGCTGGTGGAATTTCATAAAGATGCCTGGGGCGGTGAGAACTGTTTTGAGCATCTGAAAAGCTATATTACCAACCCGTCAGACAACCGGGATATTCTTGAATTCTATTACTTTATTCTCTCGATGGGCTTTGAGGGAAAATACAGAATGCTGGAGCGTGGGCCGGTACTGTTAATGGATCTGCGCAATCATCTCAGCAACCTGCTTTATATGCAGAATACGACAGAGTACCTGTCAGATGTAACGGCTGAAACTGTCCGTCCGCAACGACGCCGGTTTATTACTGCGTTAAGGATATTAATATCCGGTCTGATTATTGCTGTTATTGCTTACGGTATTTCAGCCTGGTATCTCCATGAGCAGGCGCGTCAAATCCGTAACGATATACTCGCCTGGGTACCACCTGAGCCACGCAAAATTAATATCATGGAAACTCTGCCGAACCCGTTAACCCAAATTCTGAGTGAAGGCTGGCTCGAAGTCCGTAAAGATCCGCGCGGCTGGTTGCTTATCTTCACCTCTGACGGCGCCTTTCTGACCGGAAAATCGGAGTTAACAGAAGACTTTCTCAGCAAACGTAATATTGAACGCTTAGGTGCGGCACTGGCGCCGTGGCCCGGTGATTTGGAAGTCATCGGTCATACGGATGGCACACCATTCCGCAAAACATCGGTCAATAATAATCTGAAACTCTCGGAAAACCGCGCGGTCGTTGTGGCAGATATTCTGCGGACAAATACCACAATCAATGAGACACATAACCGGGAAATTACCGCGCTCGGCAGAGGGGAAAATGAGCCTATCGCAGATAACACAACGGATGATGGACGCAAACGTAACCGCCGTGTCGATATTTTATGGAAAATCGGTAAACGTGATGCAGAACAGGCAATGCAGGGCTATCAGGGAAGCGGCGCACCTGCAACGCTGACGGATGTGACCTATCCTTCTGCCGGTGATAATGATAACAGCGATTTGGCTGAATAACCGGCCATCCCGGCCGGATGAAGTAATTGTATACAAGGACGTATTATGAT