Homologs in group_61

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12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01330 FBDBKF_01330 28.1 Morganella morganii S1 icmH type IVB secretion system protein IcmH/DotU
EHELCC_00215 EHELCC_00215 28.1 Morganella morganii S2 icmH type IVB secretion system protein IcmH/DotU
NLDBIP_03245 NLDBIP_03245 28.1 Morganella morganii S4 icmH type IVB secretion system protein IcmH/DotU
LHKJJB_04760 LHKJJB_04760 28.1 Morganella morganii S3 icmH type IVB secretion system protein IcmH/DotU
HKOGLL_02285 HKOGLL_02285 28.1 Morganella morganii S5 icmH type IVB secretion system protein IcmH/DotU
F4V73_RS00030 F4V73_RS00030 31.7 Morganella psychrotolerans icmH type IVB secretion system protein IcmH/DotU
F4V73_RS02340 F4V73_RS02340 26.8 Morganella psychrotolerans icmH type IVB secretion system protein IcmH/DotU
F4V73_RS06975 F4V73_RS06975 29.7 Morganella psychrotolerans icmH type IVB secretion system protein IcmH/DotU
F4V73_RS09425 F4V73_RS09425 23.5 Morganella psychrotolerans - OmpA family protein
F4V73_RS16850 F4V73_RS16850 28.5 Morganella psychrotolerans - OmpA family protein
F4V73_RS16855 F4V73_RS16855 30.3 Morganella psychrotolerans tssL type VI secretion system protein TssL, short form
PMI_RS03645 PMI_RS03645 27.2 Proteus mirabilis HI4320 icmH type IVB secretion system protein IcmH/DotU

Distribution of the homologs in the orthogroup group_61

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_61

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q05146 1.42e-14 75 39 2 113 3 ompA Outer membrane protein A Bordetella avium
Q9I4L6 3.08e-11 65 35 2 106 1 yfiB Outer-membrane lipoprotein YfiB Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P28612 3.56e-11 67 31 3 139 1 motB Motility protein B Bacillus subtilis (strain 168)
P37726 3.94e-10 64 38 2 108 1 oprF Outer membrane porin F Pseudomonas fluorescens
P9WIU5 7.5e-10 63 40 2 91 1 arfA Peptidoglycan-binding protein ArfA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WIU4 7.5e-10 63 40 2 91 3 arfA Peptidoglycan-binding protein ArfA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
A1KH31 7.5e-10 63 40 2 91 1 arfA Peptidoglycan-binding protein ArfA Mycobacterium bovis (strain BCG / Pasteur 1173P2)
P65594 7.5e-10 63 40 2 91 3 arfA Peptidoglycan-binding protein ArfA Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P24755 2.75e-09 61 36 5 126 3 ompA Outer membrane protein A (Fragment) Serratia odorifera
P37665 2.76e-09 60 30 2 136 1 yiaD Probable lipoprotein YiaD Escherichia coli (strain K12)
P07021 4.08e-09 58 36 4 116 3 yfiB Putative lipoprotein YfiB Escherichia coli (strain K12)
P22263 1.68e-08 59 36 4 128 3 oprF Outer membrane porin F Pseudomonas syringae pv. syringae
Q9I4Z4 2.28e-08 57 33 2 118 3 pal Peptidoglycan-associated lipoprotein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P39064 2.29e-08 58 26 1 138 3 ytxE Uncharacterized protein YtxE Bacillus subtilis (strain 168)
P0C8Z2 7.11e-08 57 31 3 123 3 ompA Outer membrane protein A (Fragment) Escherichia fergusonii
O07887 8.33e-08 56 29 5 174 3 motB Motility protein B Treponema pallidum (strain Nichols)
Q9ZL29 1.21e-07 56 28 1 90 3 motB Motility protein B Helicobacter pylori (strain J99 / ATCC 700824)
P24016 1.47e-07 55 32 3 123 3 ompA Outer membrane protein A (Fragment) Citrobacter freundii
A0A2S4N3N0 2.06e-07 56 31 3 123 1 ompA Outer membrane protein A Shigella flexneri
P24754 2.08e-07 55 32 3 123 3 ompA Outer membrane protein A (Fragment) Atlantibacter hermannii
B7LNW7 2.26e-07 56 31 3 123 3 ompA Outer membrane protein A Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
P24017 2.49e-07 56 32 3 123 1 ompA Outer membrane protein A Klebsiella pneumoniae
P02935 2.52e-07 56 31 3 123 3 ompA Outer membrane protein A Shigella dysenteriae
P0A910 2.65e-07 56 31 3 123 1 ompA Outer membrane protein A Escherichia coli (strain K12)
P0A911 2.65e-07 56 31 3 123 3 ompA Outer membrane protein A Escherichia coli O157:H7
P56427 3.26e-07 55 28 1 90 1 motB Motility protein B Helicobacter pylori (strain ATCC 700392 / 26695)
P38368 3.66e-07 55 35 5 117 1 ompA Outer membrane protein P5 Haemophilus influenzae
P43840 3.93e-07 55 35 5 117 3 ompA Outer membrane protein P5 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P02936 4.25e-07 55 32 3 123 3 ompA Outer membrane protein A Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A0A160PAH3 4.6e-07 55 35 4 108 1 omp38 Outer membrane protein Omp38 Acinetobacter sp. (strain Tol 5)
Q8Z7S0 4.69e-07 55 32 3 123 3 ompA Outer membrane protein A Salmonella typhi
P0A139 5.19e-07 52 31 2 118 3 pal Peptidoglycan-associated lipoprotein Pseudomonas putida
P0A138 5.19e-07 52 31 2 118 3 pal Peptidoglycan-associated lipoprotein Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
P09146 6.07e-07 55 34 3 105 3 ompA Outer membrane protein A Klebsiella aerogenes
P13794 6.88e-07 54 34 4 128 1 oprF Outer membrane porin F Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P45996 7.3e-07 54 35 5 117 1 ompA Outer membrane protein P5 Haemophilus influenzae
Q7NFT5 9.09e-07 55 35 3 107 1 psaB Photosystem I P700 chlorophyll a apoprotein A2 Gloeobacter violaceus (strain ATCC 29082 / PCC 7421)
A3M8K2 1.87e-06 53 33 4 108 3 omp38 Outer membrane protein Omp38 Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)
Q6RYW5 1.9e-06 53 33 4 108 1 omp38 Outer membrane protein Omp38 Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / JCM 6841 / CCUG 19606 / CIP 70.34 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
I2BAK7 3.7e-06 52 31 3 123 3 ompA Outer membrane protein A Shimwellia blattae (strain ATCC 29907 / DSM 4481 / JCM 1650 / NBRC 105725 / CDC 9005-74)
Q03478 4.41e-06 52 31 6 133 2 lafU Chemotaxis protein LafU Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
P0DJO6 6.13e-06 50 30 3 123 3 ompA Outer membrane protein A (Fragment) Shimwellia blattae
P04845 3.92e-05 49 32 5 125 3 ompA Outer membrane protein A Serratia marcescens
P38399 4.64e-05 48 28 4 146 1 ompA Outer membrane protein A Yersinia pseudotuberculosis serotype I (strain IP32953)
Q8ZG77 4.64e-05 48 28 4 146 1 ompA Outer membrane protein A Yersinia pestis
Q47154 6.1e-05 47 24 3 175 5 lafU Putative truncated flagellar export/assembly protein LafU Escherichia coli (strain K12)
P46827 9.04e-05 47 25 6 202 3 ytxE Uncharacterized 24.6 kDa protein in ccpA 3'region Priestia megaterium
P55892 0.000223 46 30 3 115 1 motB Motility protein B Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
D3GSC3 0.000244 46 24 3 175 3 lafU Putative flagellar export/assembly protein LafU Escherichia coli O44:H18 (strain 042 / EAEC)
Q89AJ5 0.000297 45 36 1 73 3 pal Peptidoglycan-associated lipoprotein Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P38369 0.000515 45 30 2 79 3 tpn50 Outer membrane protein Tpn50 Treponema pallidum (strain Nichols)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09340
Feature type CDS
Gene tssL
Product type VI secretion system protein TssL, long form
Location 1965355 - 1966743 (strand: -1)
Length 1389 (nucleotides) / 462 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_61
Orthogroup size 13
N. genomes 7

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Genomic region

Domains

PF00691 OmpA family
PF09850 Type VI secretion system protein DotU

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3455 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component TssL/VasF/DotU

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11892 type VI secretion system protein ImpK Bacterial secretion system -

Protein Sequence

MNLFNDNYGDDPDQTKKGSDGALTDNQEEQTPQSMGAFLHDDGSFFAPLDSDPLGMGAEAIDYRDLAIKSESIQARIQRVSRAEDPLLEAVQPLLRALSELPDQVSDLKQVEILKKSLKNEIATFTAVCDAVSIAWQKMAIIRYAICTAIDESVHSKAWGLASGWSQSNLLNHFEGDNDGGNKFFLLIGRLSMNPQEYTDVLDILSRILGLGFEGRYSIIENGDRQLNKIRQRLLSLQQSTRDSVPAALSPNATVTQDDNEVRRVYLPVRISMIISGFILISLFALFKYWLMVDLGEFNDRVASLKRGELKHTQLAIAVPRMRLAILLKDEIAKGLVTVDETGPQSIVTFRGDAMFLSGKQEVKPEMDSILVRVADEVKRVDGKVVISGHTDSVPIGRAKFASNEELSLKRAESVGQFFVQTGILPQNIQTKGMGASQPVSSNKDEQGRALNRRVEVYVTYL

Flanking regions ( +/- flanking 50bp)

GCCGGGGACTTCCCGGGGATACGGCTTGAGCTTTGGGGCGTGAGGGATTAATGAATCTGTTTAATGACAATTACGGTGATGATCCGGATCAGACCAAAAAAGGGTCTGACGGCGCATTAACGGATAATCAGGAAGAGCAGACCCCCCAGTCGATGGGGGCTTTTTTGCATGATGACGGTAGTTTCTTTGCCCCGCTGGACAGTGATCCGCTGGGCATGGGCGCGGAAGCGATCGATTACCGTGATCTTGCAATTAAAAGTGAAAGCATCCAGGCCCGGATTCAGCGTGTAAGCCGGGCAGAAGATCCGTTACTTGAAGCTGTGCAGCCATTATTACGGGCGCTCAGTGAACTGCCCGATCAGGTCTCTGATCTGAAACAGGTGGAAATTCTTAAAAAAAGCCTGAAGAACGAAATTGCCACCTTTACGGCGGTGTGTGATGCCGTGAGTATTGCGTGGCAGAAAATGGCGATTATCCGTTATGCCATTTGTACCGCAATCGATGAATCTGTTCACTCAAAAGCCTGGGGTCTGGCCTCCGGCTGGTCTCAGAGTAACCTTCTTAACCACTTTGAAGGGGATAACGACGGGGGGAATAAATTTTTCCTGCTGATTGGTCGCTTATCCATGAACCCGCAGGAATACACGGATGTACTGGATATCCTTTCCCGTATTCTCGGTCTCGGGTTTGAAGGTCGCTACAGTATTATTGAAAACGGCGATCGTCAGCTGAATAAAATCCGTCAGCGCCTGCTTTCATTACAGCAGAGCACCAGAGACTCTGTACCGGCGGCCTTATCGCCGAATGCGACAGTGACCCAGGATGATAATGAAGTGCGCCGGGTTTATTTACCTGTTCGTATCTCAATGATTATCAGCGGCTTTATTCTGATCAGTCTGTTTGCTCTCTTCAAATACTGGCTGATGGTTGATCTCGGTGAATTTAATGACCGGGTCGCCTCGCTCAAACGCGGCGAATTGAAACATACTCAGCTGGCAATTGCTGTACCACGGATGCGGCTGGCTATTCTGCTCAAAGATGAGATAGCCAAAGGGTTGGTCACCGTGGATGAAACAGGTCCGCAAAGTATTGTGACGTTCCGTGGTGATGCCATGTTCCTTTCAGGGAAACAGGAAGTTAAACCTGAAATGGACAGTATCCTTGTTCGCGTGGCTGATGAAGTGAAACGCGTCGACGGTAAAGTGGTTATTTCAGGCCATACTGACTCAGTTCCTATCGGACGGGCGAAGTTTGCGAGTAATGAAGAATTGTCACTGAAACGGGCAGAATCTGTGGGTCAGTTCTTTGTGCAGACCGGGATCCTTCCTCAGAACATTCAGACAAAAGGCATGGGGGCTTCACAACCTGTCAGCAGTAATAAAGATGAGCAGGGGCGTGCGCTGAACCGGCGTGTTGAAGTTTATGTTACCTATCTGTGAGTTTTAAAAATGTCATTCTGGAATAGAACATTTGCACTACGGTTTACAAA