Homologs in group_111

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10 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01330 FBDBKF_01330 100.0 Morganella morganii S1 icmH type IVB secretion system protein IcmH/DotU
EHELCC_00215 EHELCC_00215 100.0 Morganella morganii S2 icmH type IVB secretion system protein IcmH/DotU
NLDBIP_03245 NLDBIP_03245 100.0 Morganella morganii S4 icmH type IVB secretion system protein IcmH/DotU
HKOGLL_02285 HKOGLL_02285 100.0 Morganella morganii S5 icmH type IVB secretion system protein IcmH/DotU
F4V73_RS00030 F4V73_RS00030 30.1 Morganella psychrotolerans icmH type IVB secretion system protein IcmH/DotU
F4V73_RS02340 F4V73_RS02340 86.5 Morganella psychrotolerans icmH type IVB secretion system protein IcmH/DotU
F4V73_RS06975 F4V73_RS06975 25.3 Morganella psychrotolerans icmH type IVB secretion system protein IcmH/DotU
F4V73_RS09340 F4V73_RS09340 28.9 Morganella psychrotolerans tssL type VI secretion system protein TssL, long form
F4V73_RS09425 F4V73_RS09425 20.7 Morganella psychrotolerans - OmpA family protein
PMI_RS03645 PMI_RS03645 71.3 Proteus mirabilis HI4320 icmH type IVB secretion system protein IcmH/DotU

Distribution of the homologs in the orthogroup group_111

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_111

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_04760
Feature type CDS
Gene icmH
Product type IVB secretion system protein IcmH/DotU
Location 236032 - 236826 (strand: 1)
Length 795 (nucleotides) / 264 (amino acids)
In genomic island -

Contig

Accession ZDB_361
Length 286024 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_111
Orthogroup size 11
N. genomes 7

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Genomic region

Domains

PF09850 Type VI secretion system protein DotU

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3455 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component TssL/VasF/DotU

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11892 type VI secretion system protein ImpK Bacterial secretion system -

Protein Sequence

MTDDLLTGGLHDDVSDDAQYLRQRMHKQYRIPLRGENINPMIDAATPLLGMVMRMHTLSGSPLPDKLYQQVVTDIQAIEQQLQSQGYEPGAIVSFRYVLCTFIDETALGLGWNTDNGWVKKSLLVHFHNESWGGEKVFILIERLLGEPKRYLDLIEFIWLCLCLGYRGRYKVTQGHNDEFNRLLRRLQKQIRQLRPEQGSVVLYEDTASDPHRYRPGKRLRLKYIFIAGLLLAAGIYGLYLSQLNNQTQHILEQLTPLLSQGIH

Flanking regions ( +/- flanking 50bp)

TTCCCGGAGCTGGATATTCAGTTCTGGGCCATCCGTAACGGGGGCGATTTATGACCGATGATTTACTGACCGGCGGCCTGCATGATGATGTGTCTGATGACGCGCAGTACCTGCGTCAGCGGATGCACAAGCAGTACCGGATCCCGCTGCGCGGGGAAAATATCAATCCGATGATTGATGCGGCCACCCCGCTGCTCGGTATGGTCATGCGGATGCATACTCTGTCCGGCTCACCGCTGCCGGACAAGCTTTACCAGCAGGTGGTGACCGATATTCAGGCTATCGAGCAGCAGTTACAGTCCCAGGGCTATGAGCCGGGTGCGATTGTCTCCTTCCGCTATGTGCTCTGTACCTTTATTGATGAAACCGCGCTGGGTCTCGGCTGGAACACAGACAACGGCTGGGTGAAAAAATCCCTGCTGGTGCATTTCCATAATGAATCCTGGGGCGGGGAGAAAGTGTTCATTCTTATTGAACGTCTGCTCGGTGAACCGAAGCGCTATCTGGATCTGATTGAGTTTATCTGGTTGTGCCTGTGCCTCGGTTACCGGGGCCGCTATAAAGTGACGCAGGGCCATAACGATGAATTCAACCGTCTGCTGCGCCGCCTGCAAAAACAGATCCGCCAGCTGCGCCCCGAACAGGGCTCTGTTGTGCTGTATGAAGATACCGCCTCTGACCCGCACCGTTACCGGCCGGGAAAACGCCTGCGCCTCAAATATATCTTTATCGCCGGTCTGTTGCTGGCCGCCGGTATTTACGGCCTGTATCTGTCGCAGCTGAATAATCAGACACAACATATTTTGGAACAACTCACTCCGCTACTGAGTCAGGGTATACACTGATGATAAATGTCGATCTCTCAACGCTCGTTAACCGTCTTGATCCTGTTGCA