Homologs in group_4936

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4936

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4936

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16855
Feature type CDS
Gene tssL
Product type VI secretion system protein TssL, short form
Location 199759 - 200427 (strand: -1)
Length 669 (nucleotides) / 222 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000006
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4936
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF09850 Type VI secretion system protein DotU

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3455 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component TssL/VasF/DotU

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11892 type VI secretion system protein ImpK Bacterial secretion system -

Protein Sequence

MMNATNANSAMTIDAIFSDTWLMVCQLRHGSPVSDGAGLYRHVCDMVDQTRERLTEKGYPEKSVENMLYAQCALIDESVMNRPAHDDGYDQWILSPLQARYFNTLEAGDKLWDRVRELLSETAPDPDVLICFHRVLTLGFAGKYHHTTSPQREQIIQQLTARVPAYALSSSLPLVVRPALRFSRRKLYWAGWVGGILLLAALWWGFSASLEQLLSQLITQGQ

Flanking regions ( +/- flanking 50bp)

CCGGGAACGCTTGGTGAAATCCATCTCGAATTATTTGCGGTACTTCGATCATGATGAATGCAACGAACGCCAACTCAGCAATGACCATCGATGCCATTTTTTCTGATACCTGGCTGATGGTGTGTCAGTTACGCCATGGCAGCCCTGTATCAGACGGGGCGGGGTTGTACCGTCATGTCTGTGACATGGTGGACCAGACCCGTGAGCGCCTGACGGAGAAAGGTTATCCGGAAAAATCGGTCGAAAATATGCTTTACGCGCAGTGTGCGCTGATTGATGAAAGTGTCATGAATCGCCCTGCCCATGATGATGGCTACGACCAGTGGATACTCTCTCCCTTACAGGCGCGCTATTTCAATACACTGGAAGCCGGTGACAAATTATGGGATCGCGTGCGTGAGCTGCTCAGCGAAACCGCGCCGGACCCGGATGTTCTTATCTGTTTCCACCGTGTTCTGACCCTGGGATTTGCGGGGAAATATCATCACACCACATCACCTCAGCGGGAACAGATTATTCAGCAACTGACTGCCCGTGTTCCGGCGTATGCGCTGTCATCATCGCTGCCGCTGGTTGTCCGTCCGGCATTACGTTTCAGCCGCCGCAAGTTGTATTGGGCGGGATGGGTGGGCGGGATACTGTTACTCGCTGCATTGTGGTGGGGATTCTCTGCCTCACTCGAACAGTTGCTTTCGCAATTAATCACGCAGGGACAGTGATGTATAACCGGATAAAACAAAGCCTGACATTGCTGACAGGCAGCCTCCTG