COG3455


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3455, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Type VI protein secretion system component TssL/VasF/DotU
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG3455 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_61 FBDBKF_01330 257523 258317 1 icmH type IVB secretion system protein IcmH/DotU Morganella morganii S1
1 group_61 EHELCC_00215 50551 51345 -1 icmH type IVB secretion system protein IcmH/DotU Morganella morganii S2
2 group_61 NLDBIP_03245 628791 629585 1 icmH type IVB secretion system protein IcmH/DotU Morganella morganii S4
3 group_61 LHKJJB_04760 236032 236826 1 icmH type IVB secretion system protein IcmH/DotU Morganella morganii S3
4 group_61 HKOGLL_02285 50756 51550 -1 icmH type IVB secretion system protein IcmH/DotU Morganella morganii S5
5 group_61 F4V73_RS00030 8452 10029 -1 icmH type IVB secretion system protein IcmH/DotU Morganella psychrotolerans
6 group_61 F4V73_RS02340 497734 498504 -1 icmH type IVB secretion system protein IcmH/DotU Morganella psychrotolerans
7 group_61 F4V73_RS06975 1448054 1448767 -1 icmH type IVB secretion system protein IcmH/DotU Morganella psychrotolerans
8 group_61 F4V73_RS09340 1965355 1966743 -1 tssL type VI secretion system protein TssL, long form Morganella psychrotolerans
9 group_61 F4V73_RS16855 199759 200427 -1 tssL type VI secretion system protein TssL, short form Morganella psychrotolerans
10 group_61 PMI_RS03645 820659 821414 -1 icmH type IVB secretion system protein IcmH/DotU Proteus mirabilis HI4320