PF14559
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF14559, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 18 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF14559 |
Description |
Tetratricopeptide repeat |
Occurence in the database
PF14559 is associated with 18 different proteins (see tab "Protein list" and "Profile") |
The 18 proteins are classified into 5 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_1779 |
FBDBKF_12975 |
95332 |
96189 |
1 |
cnoX |
Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family |
Morganella morganii S1 |
1 |
group_1839 |
FBDBKF_13625 |
102984 |
104447 |
1 |
bepA |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains |
Morganella morganii S1 |
2 |
group_1779 |
EHELCC_06290 |
265364 |
266221 |
1 |
cnoX |
Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family |
Morganella morganii S2 |
3 |
group_1839 |
EHELCC_08470 |
170744 |
172207 |
-1 |
bepA |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains |
Morganella morganii S2 |
4 |
group_1779 |
NLDBIP_06610 |
306429 |
307286 |
1 |
cnoX |
Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family |
Morganella morganii S4 |
5 |
group_1839 |
NLDBIP_08795 |
170744 |
172207 |
-1 |
bepA |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains |
Morganella morganii S4 |
6 |
group_1779 |
LHKJJB_03490 |
283953 |
284810 |
1 |
cnoX |
Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family |
Morganella morganii S3 |
7 |
group_1839 |
LHKJJB_05470 |
84952 |
86415 |
1 |
bepA |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains |
Morganella morganii S3 |
8 |
group_1839 |
HKOGLL_05445 |
155335 |
156798 |
-1 |
bepA |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains |
Morganella morganii S5 |
9 |
group_1779 |
HKOGLL_06965 |
205817 |
206674 |
1 |
cnoX |
Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family |
Morganella morganii S5 |
10 |
group_3974 |
F4V73_RS00885 |
186159 |
186911 |
-1 |
|
tetratricopeptide repeat protein |
Morganella psychrotolerans |
11 |
group_1839 |
F4V73_RS03125 |
667409 |
668872 |
-1 |
|
M48 family metallopeptidase |
Morganella psychrotolerans |
12 |
group_1779 |
F4V73_RS16160 |
35334 |
36200 |
1 |
|
co-chaperone YbbN |
Morganella psychrotolerans |
13 |
group_935 |
PMI_RS06340 |
1389177 |
1390346 |
-1 |
lapB |
lipopolysaccharide assembly protein LapB |
Proteus mirabilis HI4320 |
14 |
group_1839 |
PMI_RS07640 |
1665635 |
1667107 |
1 |
|
M48 family metallopeptidase |
Proteus mirabilis HI4320 |
15 |
group_3902 |
PMI_RS10350 |
2273728 |
2277003 |
1 |
bcsC |
cellulose synthase complex outer membrane protein BcsC |
Proteus mirabilis HI4320 |
16 |
group_1779 |
PMI_RS10690 |
2350476 |
2351333 |
1 |
|
co-chaperone YbbN |
Proteus mirabilis HI4320 |
17 |
group_3902 |
PMI_RS15340 |
3404776 |
3408462 |
1 |
|
cellulose biosynthesis protein BcsC |
Proteus mirabilis HI4320 |