PF14559


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF14559, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 18 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF14559
Description Tetratricopeptide repeat

Occurence in the database

PF14559 is associated with 18 different proteins (see tab "Protein list" and "Profile")
The 18 proteins are classified into 5 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1779 FBDBKF_12975 95332 96189 1 cnoX Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family Morganella morganii S1
1 group_1839 FBDBKF_13625 102984 104447 1 bepA Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains Morganella morganii S1
2 group_1779 EHELCC_06290 265364 266221 1 cnoX Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family Morganella morganii S2
3 group_1839 EHELCC_08470 170744 172207 -1 bepA Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains Morganella morganii S2
4 group_1779 NLDBIP_06610 306429 307286 1 cnoX Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family Morganella morganii S4
5 group_1839 NLDBIP_08795 170744 172207 -1 bepA Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains Morganella morganii S4
6 group_1779 LHKJJB_03490 283953 284810 1 cnoX Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family Morganella morganii S3
7 group_1839 LHKJJB_05470 84952 86415 1 bepA Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains Morganella morganii S3
8 group_1839 HKOGLL_05445 155335 156798 -1 bepA Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains Morganella morganii S5
9 group_1779 HKOGLL_06965 205817 206674 1 cnoX Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family Morganella morganii S5
10 group_3974 F4V73_RS00885 186159 186911 -1 tetratricopeptide repeat protein Morganella psychrotolerans
11 group_1839 F4V73_RS03125 667409 668872 -1 M48 family metallopeptidase Morganella psychrotolerans
12 group_1779 F4V73_RS16160 35334 36200 1 co-chaperone YbbN Morganella psychrotolerans
13 group_935 PMI_RS06340 1389177 1390346 -1 lapB lipopolysaccharide assembly protein LapB Proteus mirabilis HI4320
14 group_1839 PMI_RS07640 1665635 1667107 1 M48 family metallopeptidase Proteus mirabilis HI4320
15 group_3902 PMI_RS10350 2273728 2277003 1 bcsC cellulose synthase complex outer membrane protein BcsC Proteus mirabilis HI4320
16 group_1779 PMI_RS10690 2350476 2351333 1 co-chaperone YbbN Proteus mirabilis HI4320
17 group_3902 PMI_RS15340 3404776 3408462 1 cellulose biosynthesis protein BcsC Proteus mirabilis HI4320