Orthogroup:group_1876


Homologs in group_1876

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14010 FBDBKF_14010 Morganella morganii S1 btuF vitamin B12 ABC transporter substrate-binding protein BtuF
EHELCC_11685 EHELCC_11685 Morganella morganii S2 btuF vitamin B12 ABC transporter substrate-binding protein BtuF
NLDBIP_12025 NLDBIP_12025 Morganella morganii S4 btuF vitamin B12 ABC transporter substrate-binding protein BtuF
LHKJJB_11885 LHKJJB_11885 Morganella morganii S3 btuF vitamin B12 ABC transporter substrate-binding protein BtuF
HKOGLL_10500 HKOGLL_10500 Morganella morganii S5 btuF vitamin B12 ABC transporter substrate-binding protein BtuF
F4V73_RS12865 F4V73_RS12865 Morganella psychrotolerans btuF vitamin B12 ABC transporter substrate-binding protein BtuF
PMI_RS01025 PMI_RS01025 Proteus mirabilis HI4320 btuF vitamin B12 ABC transporter substrate-binding protein BtuF

Distribution of group_1876 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_1876 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1876

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_1876.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 btuF 7

Product

# Product Occurence
1 vitamin B12 ABC transporter substrate-binding protein BtuF 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0614 7 P Inorganic ion transport and metabolism (P) ABC-type Fe3+-hydroxamate transport system, periplasmic component

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06858 7 vitamin B12 transport system substrate-binding protein ABC transporters -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01497 7 Periplasmic binding protein

Annotations of the 32 SwissProt hits

Annotation Number of occurrences
Cobalamin-binding protein 2
Hemin-binding periplasmic protein HmuT 1
Uncharacterized ABC transporter substrate-binding lipoprotein YvrC 1
Vitamin B12-binding protein 28

Protein length

Min length 268
Max length 276
Mean length (sd) 269.6 (3.0)
Median length 268.0

Protein length distribution