PF13520


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13520, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 50 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13520
Description Amino acid permease

Occurence in the database

PF13520 is associated with 50 different proteins (see tab "Protein list" and "Profile")
The 50 proteins are classified into 7 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_665 FBDBKF_02370 166787 168178 -1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S1
1 group_91 FBDBKF_09150 57823 59184 1 hdcC histidine-histamine antiporter Morganella morganii S1
2 group_91 FBDBKF_09160 60575 62017 1 Arginine/agmatine antiporter Morganella morganii S1
3 group_1644 FBDBKF_10870 2901 4262 1 potE putrescine-ornithine antiporter Morganella morganii S1
4 group_3319 FBDBKF_11035 27977 29443 -1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S1
5 group_1972 FBDBKF_14790 56325 57704 -1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S1
6 group_2079 FBDBKF_15550 37954 39435 1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S1
7 group_2948 FBDBKF_15560 40454 41734 1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S1
8 group_665 EHELCC_02840 554607 555998 -1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S2
9 group_3319 EHELCC_05190 30025 31491 1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S2
10 group_1644 EHELCC_05355 55206 56567 -1 potE putrescine-ornithine antiporter Morganella morganii S2
11 group_91 EHELCC_10250 84087 85529 -1 Arginine/agmatine antiporter Morganella morganii S2
12 group_91 EHELCC_10260 86920 88281 -1 hdcC histidine-histamine antiporter Morganella morganii S2
13 group_1972 EHELCC_15595 86401 87780 -1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S2
14 group_2079 EHELCC_15910 37254 38735 1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S2
15 group_2948 EHELCC_15920 39754 41034 1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S2
16 group_665 NLDBIP_00620 124138 125529 1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S4
17 group_3319 NLDBIP_05510 71090 72556 1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S4
18 group_1644 NLDBIP_05675 96271 97632 -1 potE putrescine-ornithine antiporter Morganella morganii S4
19 group_91 NLDBIP_10595 62358 63800 -1 Arginine/agmatine antiporter Morganella morganii S4
20 group_91 NLDBIP_10605 65191 66552 -1 hdcC histidine-histamine antiporter Morganella morganii S4
21 group_1972 NLDBIP_16125 86401 87780 -1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S4
22 group_2948 NLDBIP_16450 39629 40909 -1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S4
23 group_2079 NLDBIP_16460 41928 43409 -1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S4
24 group_665 LHKJJB_01415 267156 268547 -1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S3
25 group_3319 LHKJJB_02390 48614 50080 1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S3
26 group_1644 LHKJJB_02555 73795 75156 -1 potE putrescine-ornithine antiporter Morganella morganii S3
27 group_91 LHKJJB_10750 124976 126337 1 hdcC histidine-histamine antiporter Morganella morganii S3
28 group_91 LHKJJB_10760 127728 129170 1 Arginine/agmatine antiporter Morganella morganii S3
29 group_1972 LHKJJB_15715 28906 30285 1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S3
30 group_2079 LHKJJB_16345 37254 38735 1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S3
31 group_2948 LHKJJB_16355 39754 41034 1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S3
32 group_665 HKOGLL_01455 272667 274058 -1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S5
33 group_91 HKOGLL_13810 58277 59638 1 hdcC histidine-histamine antiporter Morganella morganii S5
34 group_91 HKOGLL_13820 61029 62471 1 Arginine/agmatine antiporter Morganella morganii S5
35 group_1972 HKOGLL_14835 28118 29497 1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S5
36 group_3319 HKOGLL_15770 72054 73520 1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S5
37 group_1644 HKOGLL_15935 97235 98596 -1 potE putrescine-ornithine antiporter Morganella morganii S5
38 group_2079 HKOGLL_16115 37254 38735 1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S5
39 group_2948 HKOGLL_16125 39754 41034 1 potE Serine transporter YbeC, amino acid:H+ symporter family Morganella morganii S5
40 group_665 F4V73_RS04755 1005669 1007060 -1 basic amino acid/polyamine antiporter Morganella psychrotolerans
41 group_1972 F4V73_RS07585 1585564 1586943 -1 APC family permease Morganella psychrotolerans
42 group_91 F4V73_RS10790 289891 291333 -1 amino acid permease Morganella psychrotolerans
43 group_91 F4V73_RS10800 292725 294086 -1 hdcC histidine-histamine antiporter Morganella psychrotolerans
44 group_2948 F4V73_RS10860 308212 309489 1 APC family permease Morganella psychrotolerans
45 group_1644 F4V73_RS11530 454460 455788 1 potE putrescine-ornithine antiporter Morganella psychrotolerans
46 group_2079 F4V73_RS17600 156590 158071 -1 amino acid permease Morganella psychrotolerans
47 group_1644 PMI_RS01475 361271 362599 -1 potE putrescine-ornithine antiporter Proteus mirabilis HI4320
48 group_665 PMI_RS05780 1262202 1263596 -1 amino acid permease Proteus mirabilis HI4320
49 group_2079 PMI_RS06800 1483959 1485512 -1 gadC glutamate:gamma-aminobutyrate antiporter Proteus mirabilis HI4320