PF13439


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13439, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 25 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13439
Description Glycosyltransferase Family 4

Occurence in the database

PF13439 is associated with 25 different proteins (see tab "Protein list" and "Profile")
The 25 proteins are classified into 6 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2165 FBDBKF_16290 45531 46658 1 rfaB Glycosyltransferase involved in cell wall bisynthesis Morganella morganii S1
1 group_2166 FBDBKF_16295 46658 47779 1 rfaB Glycosyltransferase involved in cell wall bisynthesis Morganella morganii S1
2 group_3501 FBDBKF_17315 40091 41167 1 rfaB Glycosyltransferase involved in cell wall bisynthesis Morganella morganii S1
3 group_3501 EHELCC_01575 314334 315410 -1 rfaB Glycosyltransferase involved in cell wall bisynthesis Morganella morganii S2
4 group_2165 EHELCC_16325 45531 46658 1 rfaB Glycosyltransferase involved in cell wall bisynthesis Morganella morganii S2
5 group_2166 EHELCC_16330 46658 47779 1 rfaB Glycosyltransferase involved in cell wall bisynthesis Morganella morganii S2
6 group_3501 NLDBIP_01885 364726 365802 1 rfaB Glycosyltransferase involved in cell wall bisynthesis Morganella morganii S4
7 group_2166 NLDBIP_17010 14391 15512 -1 rfaB Glycosyltransferase involved in cell wall bisynthesis Morganella morganii S4
8 group_2165 NLDBIP_17015 15512 16639 -1 rfaB Glycosyltransferase involved in cell wall bisynthesis Morganella morganii S4
9 group_3501 LHKJJB_00150 26883 27959 -1 rfaB Glycosyltransferase involved in cell wall bisynthesis Morganella morganii S3
10 group_2166 LHKJJB_16930 17493 18614 -1 rfaB Glycosyltransferase involved in cell wall bisynthesis Morganella morganii S3
11 group_2165 LHKJJB_16935 18614 19741 -1 rfaB Glycosyltransferase involved in cell wall bisynthesis Morganella morganii S3
12 group_3501 HKOGLL_00190 32394 33470 -1 rfaB Glycosyltransferase involved in cell wall bisynthesis Morganella morganii S5
13 group_2165 HKOGLL_16905 45531 46658 1 rfaB Glycosyltransferase involved in cell wall bisynthesis Morganella morganii S5
14 group_2166 HKOGLL_16910 46658 47779 1 rfaB Glycosyltransferase involved in cell wall bisynthesis Morganella morganii S5
15 group_2166 F4V73_RS17295 91507 92628 -1 glycosyltransferase Morganella psychrotolerans
16 group_2165 F4V73_RS17300 92625 93758 -1 glycosyltransferase family 4 protein Morganella psychrotolerans
17 group_3861 F4V73_RS17330 98458 99633 -1 glycosyltransferase family 4 protein Morganella psychrotolerans
18 group_3646 F4V73_RS17335 99639 100760 -1 glycosyltransferase family 4 protein Morganella psychrotolerans
19 group_2452 F4V73_RS17340 101159 102259 -1 glycosyltransferase family 4 protein Morganella psychrotolerans
20 group_2452 PMI_RS15620 3470823 3471950 1 glycosyltransferase family 4 protein Proteus mirabilis HI4320
21 group_3646 PMI_RS15630 3473094 3474200 1 glycosyltransferase family 4 protein Proteus mirabilis HI4320
22 group_3861 PMI_RS15635 3474197 3475375 1 glycosyltransferase family 4 protein Proteus mirabilis HI4320
23 group_2165 PMI_RS15670 3481389 3482519 1 glycosyltransferase family 4 protein Proteus mirabilis HI4320
24 group_2166 PMI_RS15675 3482516 3483613 1 glycosyltransferase Proteus mirabilis HI4320