Orthogroup:group_3689


Homologs in group_3689

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4 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
F4V73_RS06955 F4V73_RS06955 Morganella psychrotolerans - PAAR domain-containing protein
PMI_RS19585 PMI_RS19585 Proteus mirabilis HI4320 - RHS domain-containing protein
PMI_RS19600 PMI_RS19600 Proteus mirabilis HI4320 - hypothetical protein
PMI_RS05220 PMI_RS05220 Proteus mirabilis HI4320 - PAAR domain-containing protein

Distribution of group_3689 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3689 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3689

Orthogroup content: 4 members

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This page summarizes the annotation of all members of the orthologous group group_3689.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 4

Product

# Product Occurence
1 PAAR domain-containing protein 2
2 RHS domain-containing protein 1
3 hypothetical protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3209 2 R General function prediction only (R) Uncharacterized conserved protein RhaS, contains 28 RHS repeats
COG4104 1 U Intracellular trafficking, secretion, and vesicular transport (U) Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03527 2 RHS protein
PF05488 2 PAAR motif
PF05593 1 RHS Repeat
PF20148 1 Domain of unknown function (DUF6531)

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG041187 1 PAAR domain-containing protein VF1268 Effector delivery system

Annotations of the 14 SwissProt hits

Annotation Number of occurrences
Double-stranded DNA deaminase toxin A 1
NAD(+)--protein-arginine ADP-ribosyltransferase Tre1 1
Probable deoxyribonuclease RhsA 1
Probable deoxyribonuclease RhsB 1
Protein RhsA 1
Protein RhsB 1
Protein RhsC 1
Protein RhsD 1
Putative deoxyribonuclease RhsC 1
Putative protein RhsE 1
Toxin protein Tse5 1
tRNA nuclease WapA 1
tRNA(Glu)-specific nuclease WapA 1
tRNA3(Ser)-specific nuclease WapA 1

Protein length

Min length 78
Max length 1295
Mean length (sd) 391.0 (602.7)
Median length 95.5

Protein length distribution