Homologs in group_3505

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17315 FBDBKF_17315 100.0 Morganella morganii S1 rfaB Glycosyltransferase involved in cell wall bisynthesis
EHELCC_01575 EHELCC_01575 100.0 Morganella morganii S2 rfaB Glycosyltransferase involved in cell wall bisynthesis
NLDBIP_01885 NLDBIP_01885 100.0 Morganella morganii S4 rfaB Glycosyltransferase involved in cell wall bisynthesis
LHKJJB_00150 LHKJJB_00150 100.0 Morganella morganii S3 rfaB Glycosyltransferase involved in cell wall bisynthesis

Distribution of the homologs in the orthogroup group_3505

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3505

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P27127 9.79e-85 263 39 3 354 1 waaB Lipopolysaccharide 1,6-galactosyltransferase Escherichia coli (strain K12)
Q06994 1.43e-84 263 40 4 354 1 waaB Lipopolysaccharide 1,6-galactosyltransferase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q46634 1.17e-14 77 26 13 341 3 amsD Amylovoran biosynthesis glycosyltransferase AmsD Erwinia amylovora
O05083 1.89e-11 68 27 15 321 3 HI_1698 Uncharacterized glycosyltransferase HI_1698 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9L1I4 2.02e-08 59 25 3 176 3 SCO2592 Exopolysaccharide phosphotransferase SCO2592 Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q58459 9.41e-08 57 30 5 140 3 MJ1059 Uncharacterized glycosyltransferase MJ1059 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q46638 0.000337 45 28 5 129 3 amsK Amylovoran biosynthesis glycosyltransferase AmsK Erwinia amylovora

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_00190
Feature type CDS
Gene rfaB
Product Glycosyltransferase involved in cell wall bisynthesis
Location 32394 - 33470 (strand: -1)
Length 1077 (nucleotides) / 358 (amino acids)
In genomic island -

Contig

Accession ZDB_679
Length 398279 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3505
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF00534 Glycosyl transferases group 1
PF13439 Glycosyltransferase Family 4

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0438 Cell wall/membrane/envelope biogenesis (M) M Glycosyltransferase involved in cell wall bisynthesis

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02840 UDP-D-galactose:(glucosyl)LPS alpha-1,6-D-galactosyltransferase [EC:2.4.1.-] Lipopolysaccharide biosynthesis
Metabolic pathways		 -

Protein Sequence

MSDITKIIIAGRNISGFGGMETVFSTFSRLLTESGKNYQISFVFFNELNNSVDDTWLGNNPFTRFSSSLKNGKLKRVYFACKFASVIKKINPDYVIAFDSVGCYISRLALRFAFKKIPLFSWNHFSVTGSYKAKYIRLADKHLSISSGIATQLSGMGINPADIYTIYNPVPEQFKTITCGNTINFLYAGRLMCGGQKNLKELFSALSGVHGDWKLHIVGSGDDSEIKTLTSLAHDLKIDDKIIWHGWQSNLWNYIEKEIKNVSALLLTSTYEGLPMVLCEANSYGIYTVSSDCPTGPADIIRPYVNGELYPAGDNKKLTVILNKIVSGETKINHSVIKNCISRFYEDEYLARVSDIFK

Flanking regions ( +/- flanking 50bp)

CACTTATGTTAAATTGCCTGTATCACCTCAGTTCACGGGAAAGAGACAGCATGTCTGACATAACCAAAATCATCATTGCCGGTCGTAACATCAGCGGTTTTGGCGGCATGGAAACCGTATTCAGTACATTCAGCAGATTACTGACTGAATCCGGGAAAAACTATCAGATATCTTTCGTCTTTTTTAATGAACTGAATAATAGTGTTGACGATACATGGCTCGGTAATAACCCGTTTACACGTTTCAGTTCATCACTAAAAAACGGGAAGCTGAAGAGAGTTTATTTTGCCTGTAAGTTCGCTTCTGTTATTAAAAAAATCAATCCGGATTATGTCATTGCCTTTGATTCTGTTGGTTGTTACATCTCAAGACTGGCTTTGCGCTTCGCATTTAAAAAAATTCCATTGTTCTCGTGGAATCATTTCTCTGTCACCGGTTCATATAAAGCAAAATATATCAGACTCGCGGATAAACACCTGTCCATCAGTAGTGGCATAGCAACTCAGTTATCAGGAATGGGTATCAATCCTGCAGACATTTATACGATCTACAACCCGGTTCCGGAACAGTTTAAAACAATCACCTGTGGCAATACGATAAATTTTTTATATGCCGGTCGCTTAATGTGCGGAGGACAAAAAAACCTGAAGGAGTTATTCAGCGCATTATCTGGTGTTCATGGTGACTGGAAACTGCATATCGTCGGCTCCGGTGATGACTCTGAAATAAAAACATTAACCAGCCTGGCTCACGATTTAAAAATAGACGATAAAATCATCTGGCATGGCTGGCAATCAAATCTGTGGAATTATATAGAGAAAGAGATAAAAAATGTCTCTGCACTTCTTTTAACATCCACATACGAAGGATTACCGATGGTGCTGTGTGAGGCAAACAGCTATGGTATTTATACTGTCAGCTCAGATTGTCCGACAGGACCCGCAGATATTATTCGCCCATATGTAAATGGTGAGTTATATCCTGCCGGTGATAATAAAAAGCTCACCGTTATTCTGAATAAAATCGTTTCCGGGGAAACAAAAATAAACCATTCTGTGATAAAAAATTGCATTTCACGGTTTTATGAAGATGAATATCTTGCAAGGGTTTCGGATATATTTAAATAATAACTCTACATTTTCCAGCCACAAGCTGCCGATACACCATCAATAGTTAT