PF13393


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13393, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 19 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13393
Description Histidyl-tRNA synthetase

Occurence in the database

PF13393 is associated with 19 different proteins (see tab "Protein list" and "Profile")
The 19 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_60 FBDBKF_01050 190560 191840 -1 hisS histidine--tRNA ligase Morganella morganii S1
1 group_2801 FBDBKF_09145 55498 57399 -1 hisS Histidyl-tRNA synthetase Morganella morganii S1
2 group_60 FBDBKF_09165 62028 63299 1 hisS histidine--tRNA ligase Morganella morganii S1
3 group_60 EHELCC_00495 117028 118308 1 hisS histidine--tRNA ligase Morganella morganii S2
4 group_60 EHELCC_10245 82805 84076 -1 hisS histidine--tRNA ligase Morganella morganii S2
5 group_2801 EHELCC_10265 88705 90606 1 hisS Histidyl-tRNA synthetase Morganella morganii S2
6 group_60 NLDBIP_02965 561828 563108 -1 hisS histidine--tRNA ligase Morganella morganii S4
7 group_60 NLDBIP_10590 61076 62347 -1 hisS histidine--tRNA ligase Morganella morganii S4
8 group_2801 NLDBIP_10610 66976 68877 1 hisS Histidyl-tRNA synthetase Morganella morganii S4
9 group_60 LHKJJB_04480 169069 170349 -1 hisS histidine--tRNA ligase Morganella morganii S3
10 group_2801 LHKJJB_10745 122651 124552 -1 hisS Histidyl-tRNA synthetase Morganella morganii S3
11 group_60 LHKJJB_10765 129181 130452 1 hisS histidine--tRNA ligase Morganella morganii S3
12 group_60 HKOGLL_02565 117233 118513 1 hisS histidine--tRNA ligase Morganella morganii S5
13 group_2801 HKOGLL_13805 55952 57853 -1 hisS Histidyl-tRNA synthetase Morganella morganii S5
14 group_60 HKOGLL_13825 62482 63753 1 hisS histidine--tRNA ligase Morganella morganii S5
15 group_60 F4V73_RS07125 1479013 1480290 -1 hisS histidine--tRNA ligase Morganella psychrotolerans
16 group_60 F4V73_RS10785 288609 289880 -1 hisS histidine--tRNA ligase Morganella psychrotolerans
17 group_2801 F4V73_RS10805 294509 296410 1 ATP phosphoribosyltransferase regulatory subunit Morganella psychrotolerans
18 group_60 PMI_RS09100 1981171 1982454 -1 hisS histidine--tRNA ligase Proteus mirabilis HI4320