PF13377


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13377, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 33 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13377
Description Periplasmic binding protein-like domain

Occurence in the database

PF13377 is associated with 33 different proteins (see tab "Protein list" and "Profile")
The 33 proteins are classified into 5 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_122 FBDBKF_04495 93442 94455 1 galS HTH-type transcriptional regulator GalS Morganella morganii S1
1 group_45 FBDBKF_05750 152654 153679 1 purR HTH-type transcriptional repressor PurR Morganella morganii S1
2 group_3322 FBDBKF_11050 33234 34223 -1 ebgR transcriptional regulator EbgR Morganella morganii S1
3 group_122 FBDBKF_11080 39340 40344 1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S1
4 group_45 FBDBKF_15390 3230 4222 -1 rbsR ribose operon transcriptional repressor RbsR Morganella morganii S1
5 group_122 EHELCC_05145 19124 20128 -1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S2
6 group_3322 EHELCC_05175 25245 26234 1 ebgR transcriptional regulator EbgR Morganella morganii S2
7 group_122 EHELCC_05785 152899 153912 1 galS HTH-type transcriptional regulator GalS Morganella morganii S2
8 group_45 EHELCC_11840 27815 28840 -1 purR HTH-type transcriptional repressor PurR Morganella morganii S2
9 group_45 EHELCC_15750 2530 3522 -1 rbsR ribose operon transcriptional repressor RbsR Morganella morganii S2
10 group_122 NLDBIP_05465 60189 61193 -1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S4
11 group_3322 NLDBIP_05495 66310 67299 1 ebgR transcriptional regulator EbgR Morganella morganii S4
12 group_122 NLDBIP_06105 193964 194977 1 galS HTH-type transcriptional regulator GalS Morganella morganii S4
13 group_45 NLDBIP_12180 27770 28795 -1 purR HTH-type transcriptional repressor PurR Morganella morganii S4
14 group_45 NLDBIP_16620 77141 78133 1 rbsR ribose operon transcriptional repressor RbsR Morganella morganii S4
15 group_122 LHKJJB_02345 37713 38717 -1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S3
16 group_3322 LHKJJB_02375 43834 44823 1 ebgR transcriptional regulator EbgR Morganella morganii S3
17 group_122 LHKJJB_02985 171488 172501 1 galS HTH-type transcriptional regulator GalS Morganella morganii S3
18 group_45 LHKJJB_12040 27815 28840 -1 purR HTH-type transcriptional repressor PurR Morganella morganii S3
19 group_45 LHKJJB_16185 2530 3522 -1 rbsR ribose operon transcriptional repressor RbsR Morganella morganii S3
20 group_122 HKOGLL_06460 93352 94365 1 galS HTH-type transcriptional regulator GalS Morganella morganii S5
21 group_45 HKOGLL_10655 27815 28840 -1 purR HTH-type transcriptional repressor PurR Morganella morganii S5
22 group_122 HKOGLL_15725 61153 62157 -1 purR DNA-binding transcriptional regulator, LacI/PurR family Morganella morganii S5
23 group_3322 HKOGLL_15755 67274 68263 1 ebgR transcriptional regulator EbgR Morganella morganii S5
24 group_45 HKOGLL_15955 2530 3522 -1 rbsR ribose operon transcriptional repressor RbsR Morganella morganii S5
25 group_45 F4V73_RS03575 763999 765024 -1 purR HTH-type transcriptional repressor PurR Morganella psychrotolerans
26 group_45 F4V73_RS17755 192879 193871 1 rbsR ribose operon transcriptional repressor RbsR Morganella psychrotolerans
27 group_45 PMI_RS00420 114382 115380 -1 rbsR ribose operon transcriptional repressor RbsR Proteus mirabilis HI4320
28 group_192 PMI_RS01410 349499 350467 -1 treR trehalose operon repressor TreR Proteus mirabilis HI4320
29 group_406 PMI_RS06165 1352991 1354160 1 XylR family transcriptional regulator Proteus mirabilis HI4320
30 group_45 PMI_RS06755 1474472 1475497 1 purR HTH-type transcriptional repressor PurR Proteus mirabilis HI4320
31 group_192 PMI_RS08720 1908742 1909788 1 LacI family DNA-binding transcriptional regulator Proteus mirabilis HI4320
32 group_122 PMI_RS09595 2095863 2096873 -1 substrate-binding domain-containing protein Proteus mirabilis HI4320