PF13085


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13085, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13085
Description 2Fe-2S iron-sulfur cluster binding domain

Occurence in the database

PF13085 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_779 FBDBKF_03605 127495 128229 1 frdB succinate dehydrogenase/fumarate reductase iron-sulfur subunit Morganella morganii S1
1 group_1520 FBDBKF_09825 61954 62670 -1 sdhB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Morganella morganii S1
2 group_1520 EHELCC_04625 253919 254635 -1 sdhB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Morganella morganii S2
3 group_779 EHELCC_06930 118874 119608 -1 frdB succinate dehydrogenase/fumarate reductase iron-sulfur subunit Morganella morganii S2
4 group_1520 NLDBIP_04625 253715 254431 -1 sdhB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Morganella morganii S4
5 group_779 NLDBIP_07255 118747 119481 -1 frdB succinate dehydrogenase/fumarate reductase iron-sulfur subunit Morganella morganii S4
6 group_779 LHKJJB_06790 82493 83227 -1 frdB succinate dehydrogenase/fumarate reductase iron-sulfur subunit Morganella morganii S3
7 group_1520 LHKJJB_14005 80947 81663 1 sdhB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Morganella morganii S3
8 group_779 HKOGLL_04140 150160 150894 1 frdB succinate dehydrogenase/fumarate reductase iron-sulfur subunit Morganella morganii S5
9 group_1520 HKOGLL_12530 62735 63451 -1 sdhB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Morganella morganii S5
10 group_1520 F4V73_RS00520 109761 110477 1 succinate dehydrogenase iron-sulfur subunit Morganella psychrotolerans
11 group_779 F4V73_RS11265 392561 393295 -1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit Morganella psychrotolerans
12 group_1520 PMI_RS02795 612788 613504 1 succinate dehydrogenase iron-sulfur subunit Proteus mirabilis HI4320
13 group_779 PMI_RS17845 3917784 3918521 -1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit Proteus mirabilis HI4320