PF12838


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12838, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 30 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12838
Description 4Fe-4S dicluster domain

Occurence in the database

PF12838 is associated with 30 different proteins (see tab "Protein list" and "Profile")
The 30 proteins are classified into 7 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_791 FBDBKF_03710 143876 144427 -1 hyfH hydrogenase 4 subunit H Morganella morganii S1
1 group_927 FBDBKF_05035 12151 14493 1 rsxC electron transport complex subunit RsxC Morganella morganii S1
2 group_1892 FBDBKF_14130 20407 20949 -1 nuoI NADH-quinone oxidoreductase subunit NuoI Morganella morganii S1
3 group_3520 FBDBKF_18280 18865 22455 1 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase Morganella morganii S1
4 group_791 EHELCC_06825 102676 103227 1 hyfH hydrogenase 4 subunit H Morganella morganii S2
5 group_1892 EHELCC_08150 96036 96578 1 nuoI NADH-quinone oxidoreductase subunit NuoI Morganella morganii S2
6 group_927 EHELCC_12555 167001 169343 -1 rsxC electron transport complex subunit RsxC Morganella morganii S2
7 group_3520 EHELCC_18315 18738 22328 1 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase Morganella morganii S2
8 group_791 NLDBIP_07150 102549 103100 1 hyfH hydrogenase 4 subunit H Morganella morganii S4
9 group_1892 NLDBIP_08475 96036 96578 1 nuoI NADH-quinone oxidoreductase subunit NuoI Morganella morganii S4
10 group_927 NLDBIP_12895 166956 169298 -1 rsxC electron transport complex subunit RsxC Morganella morganii S4
11 group_3520 NLDBIP_18240 18939 22529 1 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase Morganella morganii S4
12 group_1892 LHKJJB_05790 160581 161123 -1 nuoI NADH-quinone oxidoreductase subunit NuoI Morganella morganii S3
13 group_791 LHKJJB_06685 66295 66846 1 hyfH hydrogenase 4 subunit H Morganella morganii S3
14 group_927 LHKJJB_12755 167001 169343 -1 rsxC electron transport complex subunit RsxC Morganella morganii S3
15 group_3520 LHKJJB_18435 18777 22367 1 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase Morganella morganii S3
16 group_791 HKOGLL_04245 166541 167092 -1 hyfH hydrogenase 4 subunit H Morganella morganii S5
17 group_1892 HKOGLL_05125 80627 81169 1 nuoI NADH-quinone oxidoreductase subunit NuoI Morganella morganii S5
18 group_927 HKOGLL_11370 167001 169343 -1 rsxC electron transport complex subunit RsxC Morganella morganii S5
19 group_3520 HKOGLL_18170 18755 22345 1 nifJ pyruvate:ferredoxin (flavodoxin) oxidoreductase Morganella morganii S5
20 group_1892 F4V73_RS02805 593415 593957 1 nuoI NADH-quinone oxidoreductase subunit NuoI Morganella psychrotolerans
21 group_927 F4V73_RS05475 1163888 1165921 1 rsxC electron transport complex subunit RsxC Morganella psychrotolerans
22 group_791 F4V73_RS11160 373009 373560 1 hyfH hydrogenase 4 subunit H Morganella psychrotolerans
23 group_1601 F4V73_RS14145 42981 43856 -1 4Fe-4S binding protein Morganella psychrotolerans
24 group_1601 PMI_RS05825 1274547 1275431 1 4Fe-4S binding protein Proteus mirabilis HI4320
25 group_927 PMI_RS06300 1380196 1382715 1 rsxC electron transport complex subunit RsxC Proteus mirabilis HI4320
26 group_1892 PMI_RS08610 1879395 1879937 -1 nuoI NADH-quinone oxidoreductase subunit NuoI Proteus mirabilis HI4320
27 group_555 PMI_RS09295 2031349 2031609 1 YfhL family 4Fe-4S dicluster ferredoxin Proteus mirabilis HI4320
28 group_791 PMI_RS12465 2763231 2763785 -1 hyfH hydrogenase 4 subunit H Proteus mirabilis HI4320
29 group_152 PMI_RS13380 2964242 2965192 -1 cutD choline TMA-lyase-activating enzyme Proteus mirabilis HI4320