Homologs in group_1601

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10445 FBDBKF_10445 81.9 Morganella morganii S1 iorA TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit
EHELCC_14780 EHELCC_14780 81.9 Morganella morganii S2 iorA TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit
NLDBIP_14610 NLDBIP_14610 81.9 Morganella morganii S4 iorA TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit
LHKJJB_14735 LHKJJB_14735 81.9 Morganella morganii S3 iorA TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit
HKOGLL_13355 HKOGLL_13355 81.9 Morganella morganii S5 iorA TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit
PMI_RS05825 PMI_RS05825 59.7 Proteus mirabilis HI4320 - 4Fe-4S binding protein

Distribution of the homologs in the orthogroup group_1601

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1601

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P22846 9.46e-06 45 50 1 50 1 fer Ferredoxin Clostridium perfringens (strain 13 / Type A)
Q58566 8.24e-05 47 40 2 72 4 fwdF Polyferredoxin protein FwdF Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q57716 0.000107 43 40 2 62 3 porD Pyruvate synthase subunit PorD Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P56256 0.000232 44 34 0 67 4 ysaA Putative electron transport protein YsaA Escherichia coli (strain K12)
P82853 0.000238 42 42 0 42 3 Ta0517 Probable ferredoxin TA0517 Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
P00195 0.000391 41 46 1 50 1 None Ferredoxin Clostridium pasteurianum
P44101 0.000425 43 40 2 64 4 HI_1043 Uncharacterized protein HI_1043 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P00200 0.000494 40 40 0 44 1 None Ferredoxin Thermoanaerobacterium thermosaccharolyticum
P00196 0.000747 40 40 1 55 1 None Ferredoxin Clostridium butyricum

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14145
Feature type CDS
Gene -
Product 4Fe-4S binding protein
Location 42981 - 43856 (strand: -1)
Length 876 (nucleotides) / 291 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1601
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00037 4Fe-4S binding domain
PF12838 4Fe-4S dicluster domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2221 Inorganic ion transport and metabolism (P) P Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits

Protein Sequence

MSGDSISAPAVNNRCVRKKLKNSTCDNCAAHCPADAISFGYLDIRIDNERCFQCGNCLFVCPSDAIENIPVRERLFNDNAQLVINQKEAPARVEELLVWHRQYHIRGMQITEPQVDSWLPVLAELNLRLKALQEPVWQLTIAPPAQIDTGKRFALFRQKAGAAELNRGRAKTGLNERKKLWPDDSWFDVRPDTENCILCSACAAVCQEGAILIENNQFTVDKTKCSGCMSCRDVCFPKAIDVVPQAEKNSLPVHYPYFDAHCKSCHLPFMSWKPEQILCPICQSRKEKGWL

Flanking regions ( +/- flanking 50bp)

CACAATTGAGAGAGGGGATAGTTATCAGGCGCAGCGCAATAAAATACCTGATGAGTGGCGACAGTATCAGTGCACCGGCAGTGAACAATCGCTGCGTCAGGAAGAAACTCAAAAACAGCACCTGTGACAACTGTGCGGCACACTGCCCCGCAGATGCCATCTCATTCGGGTATCTTGATATCCGGATCGATAATGAGCGCTGTTTTCAGTGCGGAAACTGCCTGTTTGTCTGCCCGTCGGATGCCATTGAAAATATTCCTGTGCGCGAACGCCTGTTTAACGACAATGCACAACTGGTTATCAATCAGAAAGAAGCCCCTGCGCGGGTTGAGGAACTGCTGGTCTGGCACCGCCAATATCATATCCGCGGCATGCAGATTACTGAACCGCAAGTGGATAGCTGGCTGCCGGTACTGGCTGAACTGAATCTTCGCCTGAAAGCCTTGCAGGAGCCGGTCTGGCAACTGACCATCGCGCCACCTGCGCAAATAGATACCGGAAAACGCTTTGCCTTGTTTCGTCAGAAAGCGGGCGCCGCAGAACTAAACCGGGGACGGGCAAAAACCGGGCTGAATGAGCGCAAAAAACTCTGGCCTGACGACAGTTGGTTTGATGTCCGTCCGGATACTGAAAACTGTATTTTATGTTCCGCCTGCGCGGCCGTGTGTCAGGAAGGGGCTATCCTGATTGAAAACAATCAGTTTACCGTGGATAAAACCAAATGCAGCGGCTGTATGAGTTGCAGGGATGTCTGTTTCCCGAAAGCGATTGATGTGGTGCCACAGGCAGAGAAAAATAGTTTACCGGTTCACTATCCGTATTTTGATGCGCACTGTAAAAGCTGCCATCTGCCTTTTATGAGTTGGAAACCGGAACAAATATTGTGCCCGATATGTCAGTCCCGTAAAGAAAAAGGCTGGTTGTGACCTCAATGCCATTACTTTAATTTTAACTATCGTCATAATAAGATACATTG