PF12794


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12794, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12794
Description Mechanosensitive ion channel inner membrane domain 1

Occurence in the database

PF12794 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1356 FBDBKF_08405 58282 61644 -1 mscM miniconductance mechanosensitive channel MscM Morganella morganii S1
1 group_2127 FBDBKF_15985 49143 52553 1 mscK mechanosensitive channel MscK Morganella morganii S1
2 group_1356 EHELCC_13120 102081 105443 1 mscM miniconductance mechanosensitive channel MscM Morganella morganii S2
3 group_2127 EHELCC_18590 6577 9987 1 mscK mechanosensitive channel MscK Morganella morganii S2
4 group_1356 NLDBIP_13460 102081 105443 1 mscM miniconductance mechanosensitive channel MscM Morganella morganii S4
5 group_2127 NLDBIP_17420 36582 39992 1 mscK mechanosensitive channel MscK Morganella morganii S4
6 group_1356 LHKJJB_13095 57000 60362 -1 mscM miniconductance mechanosensitive channel MscM Morganella morganii S3
7 group_2127 LHKJJB_17240 16196 19606 -1 mscK mechanosensitive channel MscK Morganella morganii S3
8 group_1356 HKOGLL_11935 102081 105443 1 mscM miniconductance mechanosensitive channel MscM Morganella morganii S5
9 group_2127 HKOGLL_17155 36582 39992 1 mscK mechanosensitive channel MscK Morganella morganii S5
10 group_1356 F4V73_RS09615 24251 27610 -1 mscM miniconductance mechanosensitive channel MscM Morganella psychrotolerans
11 group_2127 F4V73_RS16325 77741 81151 -1 mscK mechanosensitive channel MscK Morganella psychrotolerans
12 group_2127 PMI_RS00655 167517 170945 1 mscK mechanosensitive channel MscK Proteus mirabilis HI4320
13 group_1356 PMI_RS16680 3678166 3681501 -1 mscM miniconductance mechanosensitive channel MscM Proteus mirabilis HI4320