PF05593


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05593, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05593
Description RHS Repeat

Occurence in the database

PF05593 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2485 FBDBKF_01285 247669 248247 -1 RHS repeat protein Morganella morganii S1
1 group_2485 EHELCC_00260 60621 61199 1 RHS repeat protein Morganella morganii S2
2 group_2485 NLDBIP_03200 618937 619515 -1 RHS repeat protein Morganella morganii S4
3 group_2485 LHKJJB_04715 226178 226756 -1 RHS repeat protein Morganella morganii S3
4 group_2485 HKOGLL_02330 60826 61404 1 RHS repeat protein Morganella morganii S5
5 group_2485 PMI_RS03745 843162 845711 1 RHS repeat protein Proteus mirabilis HI4320
6 group_3689 PMI_RS05220 1138955 1142842 -1 PAAR domain-containing protein Proteus mirabilis HI4320
7 group_3697 PMI_RS05435 1189744 1194855 1 RHS repeat-associated core domain-containing protein Proteus mirabilis HI4320
8 group_3697 PMI_RS05455 1196255 1197397 1 RHS repeat-associated core domain-containing protein Proteus mirabilis HI4320
9 group_3697 PMI_RS19260 1198047 1199657 1 RHS repeat-associated core domain-containing protein Proteus mirabilis HI4320
10 group_3697 PMI_RS19270 1206547 1207938 1 RHS repeat-associated core domain-containing protein Proteus mirabilis HI4320