PF04879


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04879, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 51 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04879
Description Molybdopterin oxidoreductase Fe4S4 domain

Occurence in the database

PF04879 is associated with 51 different proteins (see tab "Protein list" and "Profile")
The 51 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_32 FBDBKF_03650 133050 134981 -1 fdhF formate dehydrogenase subunit alpha Morganella morganii S1
1 group_32 FBDBKF_07405 163964 166132 1 fdhF formate dehydrogenase subunit alpha Morganella morganii S1
2 group_72 FBDBKF_08060 147834 150881 -1 fdnG formate dehydrogenase-N subunit alpha Morganella morganii S1
3 group_20 FBDBKF_08070 152327 154747 1 bisC Anaerobic selenocysteine-containing dehydrogenase Morganella morganii S1
4 group_20 FBDBKF_10450 45874 48327 1 dmsA dimethylsulfoxide reductase subunit A Morganella morganii S1
5 group_1894 FBDBKF_14140 21938 24670 -1 nuoG NADH-quinone oxidoreductase subunit NuoG Morganella morganii S1
6 group_72 FBDBKF_16120 12659 15706 1 fdnG formate dehydrogenase-N subunit alpha Morganella morganii S1
7 group_32 EHELCC_03565 20054 22222 -1 fdhF formate dehydrogenase subunit alpha Morganella morganii S2
8 group_32 EHELCC_06885 112122 114053 1 fdhF formate dehydrogenase subunit alpha Morganella morganii S2
9 group_1894 EHELCC_08140 92315 95047 1 nuoG NADH-quinone oxidoreductase subunit NuoG Morganella morganii S2
10 group_72 EHELCC_13890 122028 125075 -1 fdnG formate dehydrogenase-N subunit alpha Morganella morganii S2
11 group_20 EHELCC_13900 126521 128941 1 bisC Anaerobic selenocysteine-containing dehydrogenase Morganella morganii S2
12 group_20 EHELCC_14785 45864 48317 1 dmsA dimethylsulfoxide reductase subunit A Morganella morganii S2
13 group_72 EHELCC_16155 12659 15706 1 fdnG formate dehydrogenase-N subunit alpha Morganella morganii S2
14 group_32 NLDBIP_03565 19850 22018 -1 fdhF formate dehydrogenase subunit alpha Morganella morganii S4
15 group_32 NLDBIP_07210 111995 113926 1 fdhF formate dehydrogenase subunit alpha Morganella morganii S4
16 group_1894 NLDBIP_08465 92315 95047 1 nuoG NADH-quinone oxidoreductase subunit NuoG Morganella morganii S4
17 group_72 NLDBIP_14335 142903 145950 -1 fdnG formate dehydrogenase-N subunit alpha Morganella morganii S4
18 group_20 NLDBIP_14345 147396 149816 1 bisC Anaerobic selenocysteine-containing dehydrogenase Morganella morganii S4
19 group_20 NLDBIP_14615 45864 48317 1 dmsA dimethylsulfoxide reductase subunit A Morganella morganii S4
20 group_72 NLDBIP_17185 46464 49511 -1 fdnG formate dehydrogenase-N subunit alpha Morganella morganii S4
21 group_1894 LHKJJB_05800 162112 164844 -1 nuoG NADH-quinone oxidoreductase subunit NuoG Morganella morganii S3
22 group_32 LHKJJB_06745 75741 77672 1 fdhF formate dehydrogenase subunit alpha Morganella morganii S3
23 group_20 LHKJJB_08505 9933 12353 -1 bisC Anaerobic selenocysteine-containing dehydrogenase Morganella morganii S3
24 group_72 LHKJJB_08515 13799 16846 1 fdnG formate dehydrogenase-N subunit alpha Morganella morganii S3
25 group_32 LHKJJB_09395 19964 22132 -1 fdhF formate dehydrogenase subunit alpha Morganella morganii S3
26 group_20 LHKJJB_14730 93409 95862 -1 dmsA dimethylsulfoxide reductase subunit A Morganella morganii S3
27 group_72 LHKJJB_17105 49566 52613 -1 fdnG formate dehydrogenase-N subunit alpha Morganella morganii S3
28 group_32 HKOGLL_04185 155715 157646 -1 fdhF formate dehydrogenase subunit alpha Morganella morganii S5
29 group_1894 HKOGLL_05115 76906 79638 1 nuoG NADH-quinone oxidoreductase subunit NuoG Morganella morganii S5
30 group_20 HKOGLL_08055 9933 12353 -1 bisC Anaerobic selenocysteine-containing dehydrogenase Morganella morganii S5
31 group_72 HKOGLL_08065 13799 16846 1 fdnG formate dehydrogenase-N subunit alpha Morganella morganii S5
32 group_32 HKOGLL_09580 168920 171088 1 fdhF formate dehydrogenase subunit alpha Morganella morganii S5
33 group_20 HKOGLL_13350 93409 95862 -1 dmsA dimethylsulfoxide reductase subunit A Morganella morganii S5
34 group_72 HKOGLL_16735 12659 15706 1 fdnG formate dehydrogenase-N subunit alpha Morganella morganii S5
35 group_1894 F4V73_RS02795 589704 592427 1 nuoG NADH-quinone oxidoreductase subunit NuoG Morganella psychrotolerans
36 group_20 F4V73_RS05070 1078926 1081325 -1 DMSO/selenate family reductase complex A subunit Morganella psychrotolerans
37 group_32 F4V73_RS08500 1754658 1756823 -1 fdhF formate dehydrogenase subunit alpha Morganella psychrotolerans
38 group_32 F4V73_RS11220 383637 385790 1 fdhF formate dehydrogenase subunit alpha Morganella psychrotolerans
39 group_20 F4V73_RS12925 190988 193408 -1 DMSO/selenate family reductase complex A subunit Morganella psychrotolerans
40 group_72 F4V73_RS12935 194972 198019 1 fdnG formate dehydrogenase-N subunit alpha Morganella psychrotolerans
41 group_20 F4V73_RS14150 44180 46627 1 dmsA dimethylsulfoxide reductase subunit A Morganella psychrotolerans
42 group_72 F4V73_RS17495 130494 133541 -1 fdnG formate dehydrogenase-N subunit alpha Morganella psychrotolerans
43 group_20 PMI_RS05810 1270635 1273031 1 molybdopterin-dependent oxidoreductase Proteus mirabilis HI4320
44 group_20 PMI_RS08345 1822787 1825225 1 molybdopterin-dependent oxidoreductase Proteus mirabilis HI4320
45 group_1894 PMI_RS08620 1880929 1883652 -1 nuoG NADH-quinone oxidoreductase subunit NuoG Proteus mirabilis HI4320
46 group_20 PMI_RS08900 1947407 1949686 1 phsA thiosulfate reductase PhsA Proteus mirabilis HI4320
47 group_20 PMI_RS14655 3247200 3249617 1 molybdopterin-dependent oxidoreductase Proteus mirabilis HI4320
48 group_32 PMI_RS14730 3265604 3267772 -1 fdhF formate dehydrogenase subunit alpha Proteus mirabilis HI4320
49 group_72 PMI_RS15395 3420023 3423070 -1 fdnG formate dehydrogenase-N subunit alpha Proteus mirabilis HI4320
50 group_32 PMI_RS17800 3909884 3912028 1 fdhF formate dehydrogenase subunit alpha Proteus mirabilis HI4320