Orthogroup:group_63



Homologs in group_63

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_03110 FBDBKF_03110 Morganella morganii S1 gltD NADPH-dependent glutamate synthase beta chain or related oxidoreductase
FBDBKF_04805 FBDBKF_04805 Morganella morganii S1 hycB Fe-S-cluster-containing hydrogenase component 2
EHELCC_06095 EHELCC_06095 Morganella morganii S2 hycB Fe-S-cluster-containing hydrogenase component 2
EHELCC_07425 EHELCC_07425 Morganella morganii S2 gltD NADPH-dependent glutamate synthase beta chain or related oxidoreductase
NLDBIP_06415 NLDBIP_06415 Morganella morganii S4 hycB Fe-S-cluster-containing hydrogenase component 2
NLDBIP_07750 NLDBIP_07750 Morganella morganii S4 gltD NADPH-dependent glutamate synthase beta chain or related oxidoreductase
LHKJJB_03295 LHKJJB_03295 Morganella morganii S3 hycB Fe-S-cluster-containing hydrogenase component 2
LHKJJB_07285 LHKJJB_07285 Morganella morganii S3 gltD NADPH-dependent glutamate synthase beta chain or related oxidoreductase
HKOGLL_03645 HKOGLL_03645 Morganella morganii S5 gltD NADPH-dependent glutamate synthase beta chain or related oxidoreductase
HKOGLL_06770 HKOGLL_06770 Morganella morganii S5 hycB Fe-S-cluster-containing hydrogenase component 2
F4V73_RS09275 F4V73_RS09275 Morganella psychrotolerans - FAD-dependent oxidoreductase
F4V73_RS11815 F4V73_RS11815 Morganella psychrotolerans - FAD-dependent oxidoreductase
PMI_RS18290 PMI_RS18290 Proteus mirabilis HI4320 - FAD-dependent oxidoreductase

Distribution of group_63 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_63 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_63

Orthogroup content: 13 members

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This page summarizes the annotation of all members of the orthologous group group_63.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 gltD 5
2 hycB 5
3 - 3

Product

# Product Occurence
1 NADPH-dependent glutamate synthase beta chain or related oxidoreductase 5
2 Fe-S-cluster-containing hydrogenase component 2 5
3 FAD-dependent oxidoreductase 3

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0493 13 ER Amino acid transport and metabolism (E)
General function prediction only (R)
NADPH-dependent glutamate synthase beta chain or related oxidoreductase

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF07992 13 Pyridine nucleotide-disulphide oxidoreductase
PF13247 6 4Fe-4S dicluster domain
PF13450 5 NAD(P)-binding Rossmann-like domain
PF14691 13 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster

Annotations of the 283 SwissProt hits

Annotation Number of occurrences
(2S)-3-sulfopropanediol sulfolyase activating enzyme 1
3-oxocholoyl-CoA 4-desaturase 1
Anaerobic dimethyl sulfoxide reductase chain B 3
Arsenate respiratory reductase iron-sulfur subunit ArrB 1
Bifunctional thioredoxin reductase/thioredoxin 1
Chlorate reductase subunit beta 1
Cindoxin reductase 1
Dihydrolipoamide dehydrogenase 1
Dihydrolipoyl dehydrogenase 13
Dihydrolipoyl dehydrogenase, mitochondrial 2
Dihydropyrimidine dehydrogenase [NADP(+)] 9
Dimethylamine dehydrogenase 1
Dimethylsulfide dehydrogenase subunit beta 1
Electron transport protein HydN 3
Ferredoxin 4
Ferredoxin--NADP reductase 80
Ferredoxin--NADP reductase 1 16
Ferredoxin--NADP reductase 2 7
Ferredoxin--NADP reductase 3 1
Flavin-containing monooxygenase 5 2
Flavin-containing monooxygenase FMO GS-OX-like 3 1
Flavin-containing monooxygenase FMO GS-OX-like 5 1
Flavin-containing monooxygenase FMO GS-OX1 1
Flavin-containing monooxygenase FMO GS-OX3 1
Formate dehydrogenase iron-sulfur subunit 2
Formate dehydrogenase subunit beta 1
Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit 2
Formate dehydrogenase-O iron-sulfur subunit 3
Formate hydrogenlyase subunit 2 3
Frd operon probable iron-sulfur subunit A (Fragment) 1
Glutamate synthase 1 [NADH], chloroplastic 2
Glutamate synthase 2 [NADH], chloroplastic 1
Glutamate synthase [NADH] 2
Glutamate synthase [NADH], amyloplastic 1
Glutamate synthase [NADPH] small chain 6
Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1 1
Hydrogenase-2 operon protein HybA 3
Hydrogenase-4 component A 1
Ion-translocating oxidoreductase complex subunit B 3
Iron-sulfur protein 1
L-aspartate semialdehyde sulfurtransferase iron-sulfur subunit 1
Menaquinone reductase, iron-sulfur cluster-binding subunit 1
Mercuric reductase 3
NAD-dependent dihydropyrimidine dehydrogenase subunit PreT 3
NAD-dependent dihydropyrimidine dehydrogenase subunit PreT homolog 1
NADH-dependent phenylglyoxylate dehydrogenase subunit beta 1
NADPH-Fe(3+) oxidoreductase subunit beta 2
NADPH-ferredoxin reductase FprA 3
NADPH:adrenodoxin oxidoreductase, mitochondrial 7
Nitrate reductase beta chain 1
Perchlorate reductase subunit beta 1
Polysulfide reductase chain B 1
Probable NADPH:adrenodoxin oxidoreductase, mitochondrial 3
Probable anaerobic dimethyl sulfoxide reductase chain YnfG 2
Probable dihydropyrimidine dehydrogenase [NADP(+)] 1
Probable ferredoxin TA0517 1
Probable ferredoxin/ferredoxin--NADP reductase 4
Protein DVU_0535 1
Protein NrfC 3
Protein NrfC homolog 1
Proton-translocating ferredoxin:NAD(+) oxidoreductase complex subunit B 1
Putative dimethyl sulfoxide reductase iron-sulfur subunit B 1
Putative electron transport protein YgfS 1
Putative electron transport protein YsaA 1
Putative glutamate synthase [NADPH] small chain 1
Putative oxidoreductase AegA 1
Putative oxidoreductase UacF 1
Putative oxidoreductase YgfK 2
Pyrogallol hydroxytransferase small subunit 1
Respiratory nitrate reductase 1 beta chain 2
Respiratory nitrate reductase 2 beta chain 1
Respiratory nitrate reductase beta chain (Fragments) 1
Respiratory nitrate reductase subunit beta 1
Selenate reductase subunit beta 1
Sulfide dehydrogenase subunit alpha 1
Sulfite dehydrogenase subunit B 1
Tetrathionate reductase subunit B 2
Thioredoxin reductase 24
Thioredoxin reductase 1 1
Thioredoxin reductase 1, mitochondrial 1
Thiosulfate reductase electron transfer subunit PhsB 2
Uncharacterized ferredoxin MJ0155 1
Uncharacterized ferredoxin MJ0265 1
Uncharacterized ferredoxin-like protein YdhX 2
Uncharacterized ferredoxin-like protein YdhY 3
Uncharacterized protein MJ0264 1

Protein length

Min length 465
Max length 654
Mean length (sd) 555.5 (95.0)
Median length 472.0

Protein length distribution