Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF02899
Protein list: lists the 22 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.
| Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
|---|---|---|---|---|---|---|---|---|
| 0 | group_519 | FBDBKF_00510 | 85735 | 86247 | -1 | fliZ | flagella biosynthesis regulatory protein FliZ | Morganella morganii S1 |
| 1 | group_885 | FBDBKF_04100 | 5787 | 6701 | -1 | xerD | site-specific tyrosine recombinase XerD | Morganella morganii S1 |
| 2 | group_174 | FBDBKF_08355 | 45803 | 46720 | 1 | xerC | tyrosine recombinase XerC | Morganella morganii S1 |
| 3 | group_519 | EHELCC_01035 | 222621 | 223133 | 1 | fliZ | flagella biosynthesis regulatory protein FliZ | Morganella morganii S2 |
| 4 | group_885 | EHELCC_05390 | 65244 | 66158 | -1 | xerD | site-specific tyrosine recombinase XerD | Morganella morganii S2 |
| 5 | group_174 | EHELCC_13170 | 117005 | 117922 | -1 | xerC | tyrosine recombinase XerC | Morganella morganii S2 |
| 6 | group_519 | NLDBIP_02425 | 457003 | 457515 | -1 | fliZ | flagella biosynthesis regulatory protein FliZ | Morganella morganii S4 |
| 7 | group_885 | NLDBIP_05710 | 106309 | 107223 | -1 | xerD | site-specific tyrosine recombinase XerD | Morganella morganii S4 |
| 8 | group_174 | NLDBIP_13510 | 117005 | 117922 | -1 | xerC | tyrosine recombinase XerC | Morganella morganii S4 |
| 9 | group_885 | LHKJJB_02590 | 83833 | 84747 | -1 | xerD | site-specific tyrosine recombinase XerD | Morganella morganii S3 |
| 10 | group_519 | LHKJJB_03940 | 64244 | 64756 | -1 | fliZ | flagella biosynthesis regulatory protein FliZ | Morganella morganii S3 |
| 11 | group_174 | LHKJJB_13045 | 44521 | 45438 | 1 | xerC | tyrosine recombinase XerC | Morganella morganii S3 |
| 12 | group_519 | HKOGLL_03105 | 222826 | 223338 | 1 | fliZ | flagella biosynthesis regulatory protein FliZ | Morganella morganii S5 |
| 13 | group_885 | HKOGLL_06065 | 5697 | 6611 | -1 | xerD | site-specific tyrosine recombinase XerD | Morganella morganii S5 |
| 14 | group_174 | HKOGLL_11985 | 117005 | 117922 | -1 | xerC | tyrosine recombinase XerC | Morganella morganii S5 |
| 15 | group_519 | F4V73_RS06520 | 1361572 | 1362087 | -1 | fliZ | flagella biosynthesis regulatory protein FliZ | Morganella psychrotolerans |
| 16 | group_885 | F4V73_RS08540 | 1763791 | 1764705 | -1 | xerD | site-specific tyrosine recombinase XerD | Morganella psychrotolerans |
| 17 | group_174 | F4V73_RS09555 | 10515 | 11432 | 1 | xerC | tyrosine recombinase XerC | Morganella psychrotolerans |
| 18 | group_174 | PMI_RS05890 | 1290737 | 1291729 | -1 | tyrosine-type recombinase/integrase | Proteus mirabilis HI4320 | |
| 19 | group_519 | PMI_RS07900 | 1731852 | 1732382 | -1 | fliZ | flagella biosynthesis regulatory protein FliZ | Proteus mirabilis HI4320 |
| 20 | group_885 | PMI_RS09920 | 2152428 | 2153369 | -1 | xerD | site-specific tyrosine recombinase XerD | Proteus mirabilis HI4320 |
| 21 | group_174 | PMI_RS16605 | 3660010 | 3660933 | 1 | xerC | tyrosine recombinase XerC | Proteus mirabilis HI4320 |
