PF02899


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02899, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 22 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02899
Description Phage integrase, N-terminal SAM-like domain

Occurence in the database

PF02899 is associated with 22 different proteins (see tab "Protein list" and "Profile")
The 22 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_443 FBDBKF_00510 85735 86247 -1 fliZ flagella biosynthesis regulatory protein FliZ Morganella morganii S1
1 group_817 FBDBKF_04100 5787 6701 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S1
2 group_189 FBDBKF_08355 45803 46720 1 xerC tyrosine recombinase XerC Morganella morganii S1
3 group_443 EHELCC_01035 222621 223133 1 fliZ flagella biosynthesis regulatory protein FliZ Morganella morganii S2
4 group_817 EHELCC_05390 65244 66158 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S2
5 group_189 EHELCC_13170 117005 117922 -1 xerC tyrosine recombinase XerC Morganella morganii S2
6 group_443 NLDBIP_02425 457003 457515 -1 fliZ flagella biosynthesis regulatory protein FliZ Morganella morganii S4
7 group_817 NLDBIP_05710 106309 107223 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S4
8 group_189 NLDBIP_13510 117005 117922 -1 xerC tyrosine recombinase XerC Morganella morganii S4
9 group_817 LHKJJB_02590 83833 84747 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S3
10 group_443 LHKJJB_03940 64244 64756 -1 fliZ flagella biosynthesis regulatory protein FliZ Morganella morganii S3
11 group_189 LHKJJB_13045 44521 45438 1 xerC tyrosine recombinase XerC Morganella morganii S3
12 group_443 HKOGLL_03105 222826 223338 1 fliZ flagella biosynthesis regulatory protein FliZ Morganella morganii S5
13 group_817 HKOGLL_06065 5697 6611 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S5
14 group_189 HKOGLL_11985 117005 117922 -1 xerC tyrosine recombinase XerC Morganella morganii S5
15 group_443 F4V73_RS06520 1361572 1362087 -1 fliZ flagella biosynthesis regulatory protein FliZ Morganella psychrotolerans
16 group_817 F4V73_RS08540 1763791 1764705 -1 xerD site-specific tyrosine recombinase XerD Morganella psychrotolerans
17 group_189 F4V73_RS09555 10515 11432 1 xerC tyrosine recombinase XerC Morganella psychrotolerans
18 group_189 PMI_RS05890 1290737 1291729 -1 tyrosine-type recombinase/integrase Proteus mirabilis HI4320
19 group_443 PMI_RS07900 1731852 1732382 -1 fliZ flagella biosynthesis regulatory protein FliZ Proteus mirabilis HI4320
20 group_817 PMI_RS09920 2152428 2153369 -1 xerD site-specific tyrosine recombinase XerD Proteus mirabilis HI4320
21 group_189 PMI_RS16605 3660010 3660933 1 xerC tyrosine recombinase XerC Proteus mirabilis HI4320