Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02899, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 22 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_443 | FBDBKF_00510 | 85735 | 86247 | -1 | fliZ | flagella biosynthesis regulatory protein FliZ | Morganella morganii S1 |
1 | group_817 | FBDBKF_04100 | 5787 | 6701 | -1 | xerD | site-specific tyrosine recombinase XerD | Morganella morganii S1 |
2 | group_189 | FBDBKF_08355 | 45803 | 46720 | 1 | xerC | tyrosine recombinase XerC | Morganella morganii S1 |
3 | group_443 | EHELCC_01035 | 222621 | 223133 | 1 | fliZ | flagella biosynthesis regulatory protein FliZ | Morganella morganii S2 |
4 | group_817 | EHELCC_05390 | 65244 | 66158 | -1 | xerD | site-specific tyrosine recombinase XerD | Morganella morganii S2 |
5 | group_189 | EHELCC_13170 | 117005 | 117922 | -1 | xerC | tyrosine recombinase XerC | Morganella morganii S2 |
6 | group_443 | NLDBIP_02425 | 457003 | 457515 | -1 | fliZ | flagella biosynthesis regulatory protein FliZ | Morganella morganii S4 |
7 | group_817 | NLDBIP_05710 | 106309 | 107223 | -1 | xerD | site-specific tyrosine recombinase XerD | Morganella morganii S4 |
8 | group_189 | NLDBIP_13510 | 117005 | 117922 | -1 | xerC | tyrosine recombinase XerC | Morganella morganii S4 |
9 | group_817 | LHKJJB_02590 | 83833 | 84747 | -1 | xerD | site-specific tyrosine recombinase XerD | Morganella morganii S3 |
10 | group_443 | LHKJJB_03940 | 64244 | 64756 | -1 | fliZ | flagella biosynthesis regulatory protein FliZ | Morganella morganii S3 |
11 | group_189 | LHKJJB_13045 | 44521 | 45438 | 1 | xerC | tyrosine recombinase XerC | Morganella morganii S3 |
12 | group_443 | HKOGLL_03105 | 222826 | 223338 | 1 | fliZ | flagella biosynthesis regulatory protein FliZ | Morganella morganii S5 |
13 | group_817 | HKOGLL_06065 | 5697 | 6611 | -1 | xerD | site-specific tyrosine recombinase XerD | Morganella morganii S5 |
14 | group_189 | HKOGLL_11985 | 117005 | 117922 | -1 | xerC | tyrosine recombinase XerC | Morganella morganii S5 |
15 | group_443 | F4V73_RS06520 | 1361572 | 1362087 | -1 | fliZ | flagella biosynthesis regulatory protein FliZ | Morganella psychrotolerans |
16 | group_817 | F4V73_RS08540 | 1763791 | 1764705 | -1 | xerD | site-specific tyrosine recombinase XerD | Morganella psychrotolerans |
17 | group_189 | F4V73_RS09555 | 10515 | 11432 | 1 | xerC | tyrosine recombinase XerC | Morganella psychrotolerans |
18 | group_189 | PMI_RS05890 | 1290737 | 1291729 | -1 | tyrosine-type recombinase/integrase | Proteus mirabilis HI4320 | |
19 | group_443 | PMI_RS07900 | 1731852 | 1732382 | -1 | fliZ | flagella biosynthesis regulatory protein FliZ | Proteus mirabilis HI4320 |
20 | group_817 | PMI_RS09920 | 2152428 | 2153369 | -1 | xerD | site-specific tyrosine recombinase XerD | Proteus mirabilis HI4320 |
21 | group_189 | PMI_RS16605 | 3660010 | 3660933 | 1 | xerC | tyrosine recombinase XerC | Proteus mirabilis HI4320 |