PF01926

Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01926, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 50 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01926
Description 50S ribosome-binding GTPase

Occurence in the database

PF01926 is associated with 50 different proteins (see tab "Protein list" and "Profile")
The 50 proteins are classified into 7 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_232 FBDBKF_01035 187091 188596 -1 der ribosome biogenesis GTPase Der Morganella morganii S1
1 group_558 FBDBKF_01410 275185 276093 -1 era GTPase Era Morganella morganii S1
2 group_604 FBDBKF_01890 65905 66996 -1 ychF redox-regulated ATPase YchF Morganella morganii S1
3 group_1366 FBDBKF_08460 71923 73203 1 hflX ribosome rescue GTPase HflX Morganella morganii S1
4 group_1393 FBDBKF_08605 102277 103446 1 obgE GTPase ObgE Morganella morganii S1
5 group_1702 FBDBKF_11865 23550 24173 1 yihA ribosome biogenesis GTP-binding protein YihA/YsxC Morganella morganii S1
6 group_2087 FBDBKF_15605 51682 53067 1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella morganii S1
7 group_558 EHELCC_00135 32775 33683 1 era GTPase Era Morganella morganii S2
8 group_232 EHELCC_00510 120272 121777 1 der ribosome biogenesis GTPase Der Morganella morganii S2
9 group_604 EHELCC_02360 453725 454816 -1 ychF redox-regulated ATPase YchF Morganella morganii S2
10 group_1393 EHELCC_12920 60279 61448 -1 obgE GTPase ObgE Morganella morganii S2
11 group_1366 EHELCC_13065 90522 91802 -1 hflX ribosome rescue GTPase HflX Morganella morganii S2
12 group_1702 EHELCC_14440 110532 111155 -1 yihA ribosome biogenesis GTP-binding protein YihA/YsxC Morganella morganii S2
13 group_2087 EHELCC_15965 50982 52367 1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella morganii S2
14 group_604 NLDBIP_01100 225320 226411 1 ychF redox-regulated ATPase YchF Morganella morganii S4
15 group_232 NLDBIP_02950 558359 559864 -1 der ribosome biogenesis GTPase Der Morganella morganii S4
16 group_558 NLDBIP_03325 646453 647361 -1 era GTPase Era Morganella morganii S4
17 group_1393 NLDBIP_13260 60279 61448 -1 obgE GTPase ObgE Morganella morganii S4
18 group_1366 NLDBIP_13405 90522 91802 -1 hflX ribosome rescue GTPase HflX Morganella morganii S4
19 group_1702 NLDBIP_15535 114469 115092 -1 yihA ribosome biogenesis GTP-binding protein YihA/YsxC Morganella morganii S4
20 group_2087 NLDBIP_16405 28296 29681 -1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella morganii S4
21 group_604 LHKJJB_00935 166274 167365 -1 ychF redox-regulated ATPase YchF Morganella morganii S3
22 group_232 LHKJJB_04465 165600 167105 -1 der ribosome biogenesis GTPase Der Morganella morganii S3
23 group_558 LHKJJB_04840 253694 254602 -1 era GTPase Era Morganella morganii S3
24 group_1366 LHKJJB_13150 70641 71921 1 hflX ribosome rescue GTPase HflX Morganella morganii S3
25 group_1393 LHKJJB_13295 100995 102164 1 obgE GTPase ObgE Morganella morganii S3
26 group_1702 LHKJJB_15075 23550 24173 1 yihA ribosome biogenesis GTP-binding protein YihA/YsxC Morganella morganii S3
27 group_2087 LHKJJB_16400 50982 52367 1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella morganii S3
28 group_604 HKOGLL_00975 171785 172876 -1 ychF redox-regulated ATPase YchF Morganella morganii S5
29 group_558 HKOGLL_02205 32980 33888 1 era GTPase Era Morganella morganii S5
30 group_232 HKOGLL_02580 120477 121982 1 der ribosome biogenesis GTPase Der Morganella morganii S5
31 group_1393 HKOGLL_11735 60279 61448 -1 obgE GTPase ObgE Morganella morganii S5
32 group_1366 HKOGLL_11880 90522 91802 -1 hflX ribosome rescue GTPase HflX Morganella morganii S5
33 group_1702 HKOGLL_14195 10213 10836 1 yihA ribosome biogenesis GTP-binding protein YihA/YsxC Morganella morganii S5
34 group_2087 HKOGLL_16170 50982 52367 1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella morganii S5
35 group_558 F4V73_RS01985 432440 433348 1 era GTPase Era Morganella psychrotolerans
36 group_604 F4V73_RS04235 896118 897209 -1 ychF redox-regulated ATPase YchF Morganella psychrotolerans
37 group_232 F4V73_RS07110 1475550 1477049 -1 der ribosome biogenesis GTPase Der Morganella psychrotolerans
38 group_1366 F4V73_RS09680 38138 39418 1 hflX ribosome rescue GTPase HflX Morganella psychrotolerans
39 group_1393 F4V73_RS09830 68862 70040 1 obgE GTPase ObgE Morganella psychrotolerans
40 group_1702 F4V73_RS14785 193350 193991 -1 yihA ribosome biogenesis GTP-binding protein YihA/YsxC Morganella psychrotolerans
41 group_2087 F4V73_RS17550 144940 146304 -1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella psychrotolerans
42 group_604 PMI_RS05230 1143741 1144832 -1 ychF redox-regulated ATPase YchF Proteus mirabilis HI4320
43 group_232 PMI_RS09085 1977743 1979233 -1 der ribosome biogenesis GTPase Der Proteus mirabilis HI4320
44 group_558 PMI_RS09315 2033573 2034481 -1 era GTPase Era Proteus mirabilis HI4320
45 group_1702 PMI_RS13950 3097655 3098278 1 yihA ribosome biogenesis GTP-binding protein YihA/YsxC Proteus mirabilis HI4320
46 group_2087 PMI_RS15480 3441208 3442572 -1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Proteus mirabilis HI4320
47 group_1366 PMI_RS16755 3693000 3694283 1 hflX GTPase HflX Proteus mirabilis HI4320
48 group_1393 PMI_RS16960 3732646 3733815 1 cgtA Obg family GTPase CgtA Proteus mirabilis HI4320
49 group_232 PMI_RS17345 3808777 3809640 1 50S ribosome-binding GTPase Proteus mirabilis HI4320