PF01926

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF01926
Protein list: lists the 50 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF01926
Description 50S ribosome-binding GTPase

Occurence in the database

PF01926 is associated with 50 different proteins
The 50 proteins are classified into 8 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_585 FBDBKF_01035 187091 188596 -1 der ribosome biogenesis GTPase Der Morganella morganii S1
1 group_632 FBDBKF_01410 275185 276093 -1 era GTPase Era Morganella morganii S1
2 group_677 FBDBKF_01890 65905 66996 -1 ychF redox-regulated ATPase YchF Morganella morganii S1
3 group_1422 FBDBKF_08460 71923 73203 1 hflX ribosome rescue GTPase HflX Morganella morganii S1
4 group_1449 FBDBKF_08605 102277 103446 1 obgE GTPase ObgE Morganella morganii S1
5 group_1744 FBDBKF_11865 23550 24173 1 yihA ribosome biogenesis GTP-binding protein YihA/YsxC Morganella morganii S1
6 group_2126 FBDBKF_15605 51682 53067 1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella morganii S1
7 group_632 EHELCC_00135 32775 33683 1 era GTPase Era Morganella morganii S2
8 group_585 EHELCC_00510 120272 121777 1 der ribosome biogenesis GTPase Der Morganella morganii S2
9 group_677 EHELCC_02360 453725 454816 -1 ychF redox-regulated ATPase YchF Morganella morganii S2
10 group_1449 EHELCC_12920 60279 61448 -1 obgE GTPase ObgE Morganella morganii S2
11 group_1422 EHELCC_13065 90522 91802 -1 hflX ribosome rescue GTPase HflX Morganella morganii S2
12 group_1744 EHELCC_14440 110532 111155 -1 yihA ribosome biogenesis GTP-binding protein YihA/YsxC Morganella morganii S2
13 group_2126 EHELCC_15965 50982 52367 1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella morganii S2
14 group_677 NLDBIP_01100 225320 226411 1 ychF redox-regulated ATPase YchF Morganella morganii S4
15 group_585 NLDBIP_02950 558359 559864 -1 der ribosome biogenesis GTPase Der Morganella morganii S4
16 group_632 NLDBIP_03325 646453 647361 -1 era GTPase Era Morganella morganii S4
17 group_1449 NLDBIP_13260 60279 61448 -1 obgE GTPase ObgE Morganella morganii S4
18 group_1422 NLDBIP_13405 90522 91802 -1 hflX ribosome rescue GTPase HflX Morganella morganii S4
19 group_1744 NLDBIP_15535 114469 115092 -1 yihA ribosome biogenesis GTP-binding protein YihA/YsxC Morganella morganii S4
20 group_2126 NLDBIP_16405 28296 29681 -1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella morganii S4
21 group_677 LHKJJB_00935 166274 167365 -1 ychF redox-regulated ATPase YchF Morganella morganii S3
22 group_585 LHKJJB_04465 165600 167105 -1 der ribosome biogenesis GTPase Der Morganella morganii S3
23 group_632 LHKJJB_04840 253694 254602 -1 era GTPase Era Morganella morganii S3
24 group_1422 LHKJJB_13150 70641 71921 1 hflX ribosome rescue GTPase HflX Morganella morganii S3
25 group_1449 LHKJJB_13295 100995 102164 1 obgE GTPase ObgE Morganella morganii S3
26 group_1744 LHKJJB_15075 23550 24173 1 yihA ribosome biogenesis GTP-binding protein YihA/YsxC Morganella morganii S3
27 group_2126 LHKJJB_16400 50982 52367 1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella morganii S3
28 group_677 HKOGLL_00975 171785 172876 -1 ychF redox-regulated ATPase YchF Morganella morganii S5
29 group_632 HKOGLL_02205 32980 33888 1 era GTPase Era Morganella morganii S5
30 group_585 HKOGLL_02580 120477 121982 1 der ribosome biogenesis GTPase Der Morganella morganii S5
31 group_1449 HKOGLL_11735 60279 61448 -1 obgE GTPase ObgE Morganella morganii S5
32 group_1422 HKOGLL_11880 90522 91802 -1 hflX ribosome rescue GTPase HflX Morganella morganii S5
33 group_1744 HKOGLL_14195 10213 10836 1 yihA ribosome biogenesis GTP-binding protein YihA/YsxC Morganella morganii S5
34 group_2126 HKOGLL_16170 50982 52367 1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella morganii S5
35 group_632 F4V73_RS01985 432440 433348 1 era GTPase Era Morganella psychrotolerans
36 group_677 F4V73_RS04235 896118 897209 -1 ychF redox-regulated ATPase YchF Morganella psychrotolerans
37 group_585 F4V73_RS07110 1475550 1477049 -1 der ribosome biogenesis GTPase Der Morganella psychrotolerans
38 group_1422 F4V73_RS09680 38138 39418 1 hflX ribosome rescue GTPase HflX Morganella psychrotolerans
39 group_1449 F4V73_RS09830 68862 70040 1 obgE GTPase ObgE Morganella psychrotolerans
40 group_1744 F4V73_RS14785 193350 193991 -1 yihA ribosome biogenesis GTP-binding protein YihA/YsxC Morganella psychrotolerans
41 group_2126 F4V73_RS17550 144940 146304 -1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Morganella psychrotolerans
42 group_677 PMI_RS05230 1143741 1144832 -1 ychF redox-regulated ATPase YchF Proteus mirabilis HI4320
43 group_585 PMI_RS09085 1977743 1979233 -1 der ribosome biogenesis GTPase Der Proteus mirabilis HI4320
44 group_632 PMI_RS09315 2033573 2034481 -1 era GTPase Era Proteus mirabilis HI4320
45 group_1744 PMI_RS13950 3097655 3098278 1 yihA ribosome biogenesis GTP-binding protein YihA/YsxC Proteus mirabilis HI4320
46 group_2126 PMI_RS15480 3441208 3442572 -1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE Proteus mirabilis HI4320
47 group_1422 PMI_RS16755 3693000 3694283 1 hflX GTPase HflX Proteus mirabilis HI4320
48 group_1449 PMI_RS16960 3732646 3733815 1 cgtA Obg family GTPase CgtA Proteus mirabilis HI4320
49 group_307 PMI_RS17345 3808777 3809640 1 50S ribosome-binding GTPase Proteus mirabilis HI4320