PF01638


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01638, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 19 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01638
Description HxlR-like helix-turn-helix

Occurence in the database

PF01638 is associated with 19 different proteins (see tab "Protein list" and "Profile")
The 19 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1282 FBDBKF_07785 78659 79030 1 hxlR DNA-binding transcriptional regulator, HxlR family Morganella morganii S1
1 group_2825 FBDBKF_10060 105531 105890 1 hxlR DNA-binding transcriptional regulator, HxlR family Morganella morganii S1
2 group_3130 FBDBKF_20120 10218 10598 -1 hxlR DNA-binding transcriptional regulator, HxlR family Morganella morganii S1
3 group_2825 EHELCC_04860 297496 297855 1 hxlR DNA-binding transcriptional regulator, HxlR family Morganella morganii S2
4 group_1282 EHELCC_13615 52853 53224 1 hxlR DNA-binding transcriptional regulator, HxlR family Morganella morganii S2
5 group_3130 EHELCC_19345 2099 2479 1 hxlR DNA-binding transcriptional regulator, HxlR family Morganella morganii S2
6 group_2825 NLDBIP_04860 297292 297651 1 hxlR DNA-binding transcriptional regulator, HxlR family Morganella morganii S4
7 group_1282 NLDBIP_14060 73728 74099 1 hxlR DNA-binding transcriptional regulator, HxlR family Morganella morganii S4
8 group_3130 NLDBIP_19475 2099 2479 1 hxlR DNA-binding transcriptional regulator, HxlR family Morganella morganii S4
9 group_1282 LHKJJB_08790 85650 86021 -1 hxlR DNA-binding transcriptional regulator, HxlR family Morganella morganii S3
10 group_2825 LHKJJB_13770 37727 38086 -1 hxlR DNA-binding transcriptional regulator, HxlR family Morganella morganii S3
11 group_3130 LHKJJB_19475 10468 10848 -1 hxlR DNA-binding transcriptional regulator, HxlR family Morganella morganii S3
12 group_1282 HKOGLL_08340 85650 86021 -1 hxlR DNA-binding transcriptional regulator, HxlR family Morganella morganii S5
13 group_2825 HKOGLL_12765 106312 106671 1 hxlR DNA-binding transcriptional regulator, HxlR family Morganella morganii S5
14 group_3130 HKOGLL_19355 2099 2479 1 hxlR DNA-binding transcriptional regulator, HxlR family Morganella morganii S5
15 group_2825 F4V73_RS00275 65735 66082 -1 helix-turn-helix domain-containing protein Morganella psychrotolerans
16 group_1282 F4V73_RS01030 220448 220888 1 helix-turn-helix domain-containing protein Morganella psychrotolerans
17 group_1282 F4V73_RS13260 278893 279264 -1 helix-turn-helix domain-containing protein Morganella psychrotolerans
18 group_3130 PMI_RS04760 1047678 1048052 -1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320