Orthogroup:group_60


Homologs in group_60

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01050 FBDBKF_01050 Morganella morganii S1 hisS histidine--tRNA ligase
FBDBKF_09165 FBDBKF_09165 Morganella morganii S1 hisS histidine--tRNA ligase
EHELCC_00495 EHELCC_00495 Morganella morganii S2 hisS histidine--tRNA ligase
EHELCC_10245 EHELCC_10245 Morganella morganii S2 hisS histidine--tRNA ligase
NLDBIP_02965 NLDBIP_02965 Morganella morganii S4 hisS histidine--tRNA ligase
NLDBIP_10590 NLDBIP_10590 Morganella morganii S4 hisS histidine--tRNA ligase
LHKJJB_04480 LHKJJB_04480 Morganella morganii S3 hisS histidine--tRNA ligase
LHKJJB_10765 LHKJJB_10765 Morganella morganii S3 hisS histidine--tRNA ligase
HKOGLL_02565 HKOGLL_02565 Morganella morganii S5 hisS histidine--tRNA ligase
HKOGLL_13825 HKOGLL_13825 Morganella morganii S5 hisS histidine--tRNA ligase
F4V73_RS07125 F4V73_RS07125 Morganella psychrotolerans hisS histidine--tRNA ligase
F4V73_RS10785 F4V73_RS10785 Morganella psychrotolerans hisS histidine--tRNA ligase
PMI_RS09100 PMI_RS09100 Proteus mirabilis HI4320 hisS histidine--tRNA ligase

Distribution of group_60 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_60 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_60

Orthogroup content: 13 members

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This page summarizes the annotation of all members of the orthologous group group_60.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hisS 13

Product

# Product Occurence
1 histidine--tRNA ligase 13

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0124 13 J Translation, ribosomal structure and biogenesis (J) Histidyl-tRNA synthetase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01892 13 histidyl-tRNA synthetase [EC:6.1.1.21] Aminoacyl-tRNA biosynthesis -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03129 7 Anticodon binding domain
PF13393 13 Histidyl-tRNA synthetase

Annotations of the 507 SwissProt hits

Annotation Number of occurrences
Histidine--tRNA ligase 498
Histidine--tRNA ligase 1 1
Histidine--tRNA ligase 2 5
Histidine--tRNA ligase, chloroplastic 3

Protein length

Min length 423
Max length 427
Mean length (sd) 424.6 (1.6)
Median length 425.0

Protein length distribution