PF01565


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01565, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 20 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01565
Description FAD binding domain

Occurence in the database

PF01565 is associated with 20 different proteins (see tab "Protein list" and "Profile")
The 20 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1036 FBDBKF_05840 170117 173185 -1 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase Morganella morganii S1
1 group_1971 FBDBKF_14780 53558 55303 -1 dld D-lactate dehydrogenase Morganella morganii S1
2 group_2446 FBDBKF_20340 521 1558 1 murB UDP-N-acetylmuramate dehydrogenase Morganella morganii S1
3 group_1036 EHELCC_11750 8309 11377 1 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase Morganella morganii S2
4 group_1971 EHELCC_15585 83634 85379 -1 dld D-lactate dehydrogenase Morganella morganii S2
5 group_2446 EHELCC_19680 521 1558 1 murB UDP-N-acetylmuramate dehydrogenase Morganella morganii S2
6 group_1036 NLDBIP_12090 8264 11332 1 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase Morganella morganii S4
7 group_1971 NLDBIP_16115 83634 85379 -1 dld D-lactate dehydrogenase Morganella morganii S4
8 group_2446 NLDBIP_19675 3025 4062 -1 murB UDP-N-acetylmuramate dehydrogenase Morganella morganii S4
9 group_1036 LHKJJB_11950 8309 11377 1 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase Morganella morganii S3
10 group_1971 LHKJJB_15725 31307 33052 1 dld D-lactate dehydrogenase Morganella morganii S3
11 group_2446 LHKJJB_19625 521 1558 1 murB UDP-N-acetylmuramate dehydrogenase Morganella morganii S3
12 group_1036 HKOGLL_10565 8309 11377 1 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase Morganella morganii S5
13 group_1971 HKOGLL_14845 30519 32264 1 dld D-lactate dehydrogenase Morganella morganii S5
14 group_2446 HKOGLL_19555 3025 4062 -1 murB UDP-N-acetylmuramate dehydrogenase Morganella morganii S5
15 group_1036 F4V73_RS03485 744045 747113 1 FAD-binding and (Fe-S)-binding domain-containing protein Morganella psychrotolerans
16 group_1971 F4V73_RS07575 1582739 1584484 -1 dld D-lactate dehydrogenase Morganella psychrotolerans
17 group_2446 F4V73_RS18865 523 1560 1 murB UDP-N-acetylmuramate dehydrogenase Morganella psychrotolerans
18 group_1036 PMI_RS06865 1497351 1500407 -1 FAD-binding and (Fe-S)-binding domain-containing protein Proteus mirabilis HI4320
19 group_2446 PMI_RS16090 3575840 3576874 1 murB UDP-N-acetylmuramate dehydrogenase Proteus mirabilis HI4320