Orthogroup:group_2008


Homologs in group_2008

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15085 FBDBKF_15085 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
EHELCC_11160 EHELCC_11160 Morganella morganii S2 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_11505 NLDBIP_11505 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_11365 LHKJJB_11365 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_09975 HKOGLL_09975 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family
F4V73_RS12365 F4V73_RS12365 Morganella psychrotolerans - LysR family transcriptional regulator
PMI_RS01650 PMI_RS01650 Proteus mirabilis HI4320 - LysR family transcriptional regulator

Distribution of group_2008 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2008 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2008

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2008.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 lysR 5
2 - 2

Product

# Product Occurence
1 DNA-binding transcriptional regulator, LysR family 5
2 LysR family transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0583 7 K Transcription (K) DNA-binding transcriptional regulator, LysR family

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00126 7 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 7 LysR substrate binding domain

Annotations of the 167 SwissProt hits

Annotation Number of occurrences
AhcY transcriptional activator HvrB 1
Carbapenem-hydrolyzing beta-lactamase transcriptional activator 1
DNA-binding transcriptional dual regulator OxyR 1
Glycine cleavage system transcriptional activator 3
Glycine cleavage system transcriptional activator homolog 1
HTH-type transcriptional activator AaeR 3
HTH-type transcriptional activator AllS 11
HTH-type transcriptional activator AmpR 7
HTH-type transcriptional activator BauR 1
HTH-type transcriptional activator CmpR 3
HTH-type transcriptional activator IlvY 3
HTH-type transcriptional activator TtdR 5
HTH-type transcriptional regulator AbgR 1
HTH-type transcriptional regulator AlsR 1
HTH-type transcriptional regulator ArgP 1
HTH-type transcriptional regulator BbuR 1
HTH-type transcriptional regulator BenM 1
HTH-type transcriptional regulator BlaA 1
HTH-type transcriptional regulator BudR 1
HTH-type transcriptional regulator BudR (Fragment) 1
HTH-type transcriptional regulator CatM 1
HTH-type transcriptional regulator CbbR 1
HTH-type transcriptional regulator CfxR 1
HTH-type transcriptional regulator ClcR 1
HTH-type transcriptional regulator CrgA 2
HTH-type transcriptional regulator CynR 2
HTH-type transcriptional regulator CysB 4
HTH-type transcriptional regulator CysL 1
HTH-type transcriptional regulator CzcR 6
HTH-type transcriptional regulator DmlR 1
HTH-type transcriptional regulator DsdC 1
HTH-type transcriptional regulator GalR 1
HTH-type transcriptional regulator GbpR 1
HTH-type transcriptional regulator GltR 1
HTH-type transcriptional regulator IlvY 1
HTH-type transcriptional regulator MetR 2
HTH-type transcriptional regulator NmoR 1
HTH-type transcriptional regulator PcaQ 2
HTH-type transcriptional regulator PerR 1
HTH-type transcriptional regulator PgrR 1
HTH-type transcriptional regulator PtxR 1
HTH-type transcriptional regulator ShiR 1
HTH-type transcriptional regulator SoxR 1
HTH-type transcriptional regulator TdcA 3
HTH-type transcriptional regulator TdfR 1
HTH-type transcriptional regulator TfdS 1
HTH-type transcriptional regulator TfdT 1
HTH-type transcriptional regulator TtuA 2
HTH-type transcriptional regulator XapR 1
HTH-type transcriptional regulator YhaJ 1
HTH-type transcriptional regulator YjiE 1
HTH-type transcriptional regulator YofA 2
HTH-type transcriptional regulator YtlI 1
HTH-type transcriptional regulator cbl 1
HTH-type transcriptional repressor PA14_22550 1
Hca operon transcriptional activator HcaR 1
Hydrogen peroxide-inducible genes activator 5
Iron-regulated virulence regulatory protein IrgB 2
Nitrogen assimilation regulatory protein nac 1
Probable HTH-type transcriptional regulator LrrA 1
Probable HTH-type transcriptional regulator LtrA 1
Probable HTH-type transcriptional regulator SinR 1
Probable HTH-type transcriptional regulator YhaJ 1
Probable RuBisCO transcriptional regulator 13
Probable cat1 operon transcriptional activator 1
Probable hydrogen peroxide-inducible genes activator 4
Probable hydrogen peroxide-inducible genes activator (Fragment) 1
Putative LysR family substrate binding domain-containing protein YagP 1
Putative protein YqfE 1
Putative transcriptional regulator 1
Regulatory protein NocR 2
SDS degradation transcriptional activation protein 1
Transcriptional dual regulator GltC 1
Uncharacterized HTH-type transcriptional regulator HI_1364 1
Uncharacterized HTH-type transcriptional regulator MJ0300 1
Uncharacterized HTH-type transcriptional regulator MT2340 1
Uncharacterized HTH-type transcriptional regulator Mb2303c 1
Uncharacterized HTH-type transcriptional regulator Rv2282c 1
Uncharacterized HTH-type transcriptional regulator YafC 1
Uncharacterized HTH-type transcriptional regulator YahB 1
Uncharacterized HTH-type transcriptional regulator YbhD 1
Uncharacterized HTH-type transcriptional regulator YcaN 1
Uncharacterized HTH-type transcriptional regulator YdcI 1
Uncharacterized HTH-type transcriptional regulator YeiE 3
Uncharacterized HTH-type transcriptional regulator YfeR 2
Uncharacterized HTH-type transcriptional regulator YfiE 1
Uncharacterized HTH-type transcriptional regulator YhjC 1
Uncharacterized HTH-type transcriptional regulator YiaU 1
Uncharacterized HTH-type transcriptional regulator YkuM 1
Uncharacterized HTH-type transcriptional regulator YnfL 1
Uncharacterized HTH-type transcriptional regulator YoaU 1
Uncharacterized HTH-type transcriptional regulator YusT 1
Uncharacterized HTH-type transcriptional regulator YvbU 1
Uncharacterized HTH-type transcriptional regulator YwbI 1
Uncharacterized HTH-type transcriptional regulator YybE 1
Uncharacterized HTH-type transcriptional regulator in ibpB-leuC intergenic region 1
Uncharacterized HTH-type transcriptional regulator in lacR 5'region (Fragment) 1
Uncharacterized HTH-type transcriptional regulator y4mQ 1
Uncharacterized protein YqfE 1

Protein length

Min length 306
Max length 308
Mean length (sd) 307.7 (0.8)
Median length 308.0

Protein length distribution