Homologs in group_1036

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05840 FBDBKF_05840 71.7 Morganella morganii S1 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase
EHELCC_11750 EHELCC_11750 71.7 Morganella morganii S2 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase
NLDBIP_12090 NLDBIP_12090 71.7 Morganella morganii S4 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase
LHKJJB_11950 LHKJJB_11950 71.7 Morganella morganii S3 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase
HKOGLL_10565 HKOGLL_10565 71.7 Morganella morganii S5 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase
F4V73_RS03485 F4V73_RS03485 70.3 Morganella psychrotolerans - FAD-binding and (Fe-S)-binding domain-containing protein

Distribution of the homologs in the orthogroup group_1036

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1036

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77748 0.0 1587 72 2 1019 1 ydiJ D-2-hydroxyglutarate dehydrogenase Escherichia coli (strain K12)
A0A0H3KZS3 0.0 1577 72 0 1017 1 ydiJ D-2-hydroxyglutarate dehydrogenase Pantoea ananatis (strain AJ13355)
Q57252 0.0 1305 59 4 1029 1 HI_1163 D-2-hydroxyglutarate dehydrogenase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q88EH0 0.0 1015 50 8 1003 2 ydiJ D-2-hydroxyglutarate dehydrogenase Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
P94535 7.67e-41 160 26 13 515 3 glcD Glycolate oxidase subunit GlcD Bacillus subtilis (strain 168)
Q86WU2 1.01e-31 134 24 16 540 1 LDHD Probable D-lactate dehydrogenase, mitochondrial Homo sapiens
Q94AX4 1.01e-31 135 25 21 550 1 DLD D-lactate dehydrogenase [cytochrome], mitochondrial Arabidopsis thaliana
D4MUV9 1.45e-31 133 25 16 500 1 CL2_23160 D-lactate dehydrogenase Anaerostipes hadrus
H6LBS1 1.69e-30 129 25 15 496 1 lctD Lactate dehydrogenase (NAD(+),ferredoxin) subunit LctD Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655 / WB1)
F1QXM5 2.96e-28 123 25 19 526 2 ldhd Probable D-lactate dehydrogenase, mitochondrial Danio rerio
Q7TNG8 3.1e-27 120 24 18 534 1 Ldhd Probable D-lactate dehydrogenase, mitochondrial Mus musculus
P0AEP9 9.32e-25 113 24 17 540 1 glcD Glycolate oxidase subunit GlcD Escherichia coli (strain K12)
P0AEQ0 9.32e-25 113 24 17 540 3 glcD Glycolate oxidase subunit GlcD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
O29853 2.03e-22 105 25 13 448 1 dld D-lactate dehydrogenase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
A4VGK4 2.49e-22 105 23 17 499 1 d2hgdh D-2-hydroxyglutarate dehydrogenase Stutzerimonas stutzeri (strain A1501)
P0DV35 1.12e-19 97 23 17 501 1 XVT_549 D-2-hydroxyglutarate dehydrogenase Xanthomonas citri pv. viticola (strain LMG 965 / NCPPB 2475 / ICMP 3867 / CFBP 7660)
P32891 1.65e-19 97 22 15 498 1 DLD1 D-lactate dehydrogenase [cytochrome] 1, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q12627 6e-19 95 21 12 497 3 DLD1 D-lactate dehydrogenase [cytochrome], mitochondrial Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
O23240 2.26e-18 93 23 17 499 1 D2HGDH D-2-hydroxyglutarate dehydrogenase, mitochondrial Arabidopsis thaliana
Q7XI14 7.82e-18 92 22 19 522 3 D2HGDH Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial Oryza sativa subsp. japonica
Q8N465 8.78e-18 91 21 14 498 1 D2HGDH D-2-hydroxyglutarate dehydrogenase, mitochondrial Homo sapiens
B8B7X6 9.48e-18 91 22 18 521 3 D2HGDH Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial Oryza sativa subsp. indica
A1L258 1.73e-17 90 23 17 494 2 d2hgdh D-2-hydroxyglutarate dehydrogenase, mitochondrial Danio rerio
P84850 4.76e-17 89 22 14 497 1 D2hgdh D-2-hydroxyglutarate dehydrogenase, mitochondrial Rattus norvegicus
Q9V778 1.23e-16 88 23 20 557 2 Agps Alkylglycerone-phosphate synthase Drosophila melanogaster
P9WIT1 1.66e-16 87 24 20 539 1 Rv2280 Uncharacterized FAD-linked oxidoreductase Rv2280 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WIT0 1.66e-16 87 24 20 539 3 MT2338 Uncharacterized FAD-linked oxidoreductase MT2338 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q8CIM3 5.88e-16 85 21 13 497 1 D2hgdh D-2-hydroxyglutarate dehydrogenase, mitochondrial Mus musculus
Q1JPD3 2.1e-15 84 21 16 502 2 D2HGDH D-2-hydroxyglutarate dehydrogenase, mitochondrial Bos taurus
P39976 2.22e-15 84 22 22 574 1 DLD3 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O00116 7.68e-14 79 22 20 571 1 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal Homo sapiens
P46681 7.73e-14 79 21 21 557 1 DLD2 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q8C0I1 4.88e-12 73 21 15 524 1 Agps Alkyldihydroxyacetonephosphate synthase, peroxisomal Mus musculus
Q9EQR2 4.92e-12 73 21 18 574 1 Agps Alkyldihydroxyacetonephosphate synthase, peroxisomal Rattus norvegicus
P97275 9.38e-12 72 22 8 367 1 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal Cavia porcellus
O45218 9.75e-10 66 21 18 518 2 ads-1 Alkyldihydroxyacetonephosphate synthase Caenorhabditis elegans
P43801 1.38e-08 62 22 13 371 3 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8X7S0 8.29e-08 59 26 7 255 3 ygcU Uncharacterized FAD-linked oxidoreductase YgcU Escherichia coli O157:H7
Q46911 8.74e-08 59 26 7 255 3 ygcU Uncharacterized FAD-linked oxidoreductase YgcU Escherichia coli (strain K12)
P56216 1.81e-05 52 27 3 147 1 VAOA Vanillyl-alcohol oxidase Penicillium simplicissimum
P58710 2.18e-05 52 24 4 186 1 Gulo L-gulonolactone oxidase Mus musculus
P0A996 2.78e-05 51 20 14 373 1 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C Escherichia coli (strain K12)
P0A997 2.78e-05 51 20 14 373 3 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C Escherichia coli O157:H7
Q9C1X2 6.45e-05 50 22 21 520 3 SPBC713.03 Putative D-lactate dehydrogenase C713.03, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
O97157 0.000229 48 25 3 143 3 None Alkyldihydroxyacetonephosphate synthase Trypanosoma brucei brucei
O96759 0.000317 48 21 8 301 1 eapA Alkyldihydroxyacetonephosphate synthase Dictyostelium discoideum
Q90YK3 0.000517 47 23 5 151 2 GULO L-gulonolactone oxidase Scyliorhinus torazame

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06865
Feature type CDS
Gene -
Product FAD-binding and (Fe-S)-binding domain-containing protein
Location 1497351 - 1500407 (strand: -1)
Length 3057 (nucleotides) / 1018 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1036
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01565 FAD binding domain
PF02913 FAD linked oxidases, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0277 Energy production and conversion (C) C FAD/FMN-containing lactate dehydrogenase/glycolate oxidase

Protein Sequence

MIPRISQAPQVSELTTEFLNTLRQNGFTGDISSTYADRLTMATDNSIYQLLPQAVIFPRSTADVTIVARLVDEPRFHSLSLTPRGGGTGTNGQALTEGIVVDLSRYMKRIIEINPEQRWVKVEAGVIKDELNLFLKPYGFFFAPELSTSNRATLGGMINTDASGQGSMVYGKTSDHVLGVRAVLLGGELLETRAMDSALAETIAKEDSAVGRIYQTVLSRCKAQRQLILEKFPKLNRFLTGYDLRHVFSDDMKHFDLTRILTGSEGTLAFITEATLDITPIPKQRSLVNVKYDSFDSALRNAPFLVKAKALSVETVDSKVLNLAREDIVWHSVNALITDVPDKDMQGLNIVEFAGDDKTLIASQVEDLCQRLDKLMKNGEGGVIGYQVCDNLADINRIYAMRKKAVGLLGNAKGHAKPIPFVEDTCVPPEHLADYITEFRALLDSYQLNYGMFGHVDAGVLHVRPALDMCDPQQEQLMKTISDEIVALTAKYGGLLWGEHGKGFRAQYSPEFFGETLYHELRQIKTVFDPRNRLNPGKICPPLEVEAPMKQVDAIKRGTFDRTIPVSVREDFRGALECNGNGLCFNFDVKSPMCPSMKITGQRIHSPKGRATLVREWLRLLTEQGVSPQQLETSLTNNKPSLRGLIEKTRNTWKAKRGEYDFSHEVKIAMNGCLACKACSTQCPIKIDVPSFRAKFTQLYHQRYLRPLKDHIVANVELTTPLMAKVPSLFNFFIKQPLVQSLSKRTIGMVDLPLLSSPTLKQQLAGHSALTMTLEELEQLSEKQRSHYVIVVQDPFTSYYDAKVVADFIKLIEKIGFKPVLLPFSPNGKAQHIKGFLQQFSKTAQKTATMLNRVAQLSIPMVGVDPALVLCYRDEYREILGDKRGNFKVQLVHEWLNQLVSEPIEICEDAEKWYLFSHCTESTALPQSMQQWQAIFQRYGQPLEVVTTGCCGMAGTYGHEVNNYKNSLGIYQLSWGNALKTLPTARCLSTGYSCRSQVKRIDNIELKHPLQALLEIMQ

Flanking regions ( +/- flanking 50bp)

ATAGTTTTAATAAAGCAATGTGGATAAATTAGATTAAAGAGCTATAACAAATGATCCCACGTATATCGCAAGCACCGCAAGTCAGTGAACTCACAACCGAATTTTTAAATACACTCCGACAAAATGGTTTTACAGGTGATATATCGAGCACTTATGCCGATAGACTCACTATGGCAACAGATAACAGTATTTATCAGTTGCTACCACAGGCGGTTATTTTTCCTCGTTCTACAGCGGATGTGACTATTGTAGCACGTTTAGTGGATGAACCTCGTTTTCATTCCCTCTCTTTGACACCAAGAGGTGGCGGAACCGGCACTAATGGTCAAGCGTTAACCGAGGGTATCGTGGTGGATTTATCTCGTTATATGAAACGTATTATTGAGATAAACCCAGAACAGCGATGGGTAAAGGTAGAAGCCGGTGTGATAAAAGATGAACTTAATCTGTTTTTAAAACCCTATGGTTTCTTTTTTGCGCCAGAACTGTCTACCAGTAATCGTGCGACATTAGGGGGAATGATCAATACCGATGCTTCAGGGCAAGGCTCTATGGTATATGGCAAAACCTCCGATCATGTATTAGGCGTCAGAGCCGTTTTACTAGGCGGAGAATTGCTTGAAACTCGCGCGATGGACAGCGCTTTAGCTGAAACTATTGCGAAAGAAGATTCTGCTGTTGGTCGGATATATCAAACGGTATTATCCCGTTGCAAAGCACAACGTCAGCTTATTCTCGAAAAATTTCCTAAATTGAATCGCTTTTTAACGGGCTATGATTTACGCCATGTGTTTAGCGATGATATGAAGCATTTTGATCTTACGCGTATTCTAACCGGCTCAGAAGGGACTTTGGCCTTTATTACCGAGGCAACACTCGATATTACCCCCATTCCAAAGCAGCGCAGTTTAGTGAATGTGAAGTATGACTCATTTGATTCCGCATTGCGTAACGCGCCGTTTTTAGTAAAAGCAAAGGCGCTTTCTGTTGAAACTGTTGACTCCAAAGTATTAAACCTTGCTCGAGAAGATATTGTCTGGCATTCCGTTAATGCATTGATTACGGATGTGCCCGATAAAGATATGCAAGGGCTAAATATTGTTGAGTTTGCCGGTGATGATAAAACACTGATTGCCTCACAAGTGGAGGATTTATGTCAGCGCTTAGATAAGCTGATGAAGAATGGCGAAGGGGGCGTTATCGGTTATCAGGTATGTGATAATCTCGCCGATATTAACCGTATTTATGCCATGCGTAAAAAAGCAGTAGGGCTATTAGGTAATGCTAAAGGGCATGCTAAACCCATTCCTTTTGTTGAAGATACTTGTGTGCCACCAGAGCATTTAGCGGATTATATTACTGAATTTAGGGCATTACTTGATAGTTATCAGCTCAATTACGGTATGTTTGGTCATGTTGATGCTGGCGTATTGCATGTGAGACCTGCTTTAGATATGTGTGATCCGCAACAAGAACAACTCATGAAAACCATTTCTGATGAAATTGTTGCATTAACGGCGAAATATGGTGGCTTACTATGGGGGGAGCATGGAAAAGGCTTTAGAGCGCAATATAGTCCAGAATTCTTTGGCGAAACCCTTTATCACGAATTACGTCAAATAAAAACGGTGTTCGATCCTCGAAATAGACTTAACCCAGGGAAAATATGTCCTCCTCTCGAGGTTGAGGCGCCAATGAAACAGGTCGATGCTATTAAACGCGGCACATTTGATCGCACCATTCCTGTATCGGTTCGCGAAGATTTTCGCGGTGCATTAGAGTGTAATGGTAATGGATTATGTTTTAACTTTGATGTTAAAAGTCCAATGTGTCCTTCTATGAAAATAACTGGACAACGTATTCATTCACCTAAAGGCAGAGCGACATTAGTCAGAGAGTGGTTACGTCTACTTACAGAGCAAGGAGTAAGCCCTCAGCAGTTAGAAACAAGTCTTACAAATAACAAACCTAGCTTACGGGGACTGATTGAAAAAACACGCAATACATGGAAAGCTAAACGTGGAGAATATGATTTCTCTCATGAGGTTAAAATAGCAATGAATGGTTGTTTAGCCTGTAAAGCGTGCTCTACACAATGCCCGATTAAAATTGACGTGCCATCATTTAGAGCCAAATTTACTCAGTTATATCATCAACGCTATCTACGTCCGCTAAAAGATCATATTGTGGCAAATGTCGAACTCACCACACCGTTAATGGCAAAAGTACCAAGTCTGTTTAATTTCTTTATTAAGCAACCATTGGTGCAATCGTTGAGTAAACGTACTATTGGTATGGTAGATCTGCCTCTATTGTCATCTCCGACATTAAAGCAGCAGTTAGCTGGACATAGCGCGTTAACGATGACCTTGGAAGAGTTAGAGCAGTTATCAGAAAAGCAACGAAGCCATTATGTTATCGTGGTACAAGATCCATTTACCAGTTATTACGATGCTAAAGTAGTTGCTGACTTTATTAAGTTGATTGAAAAAATTGGTTTTAAACCTGTGCTATTGCCTTTTTCACCTAACGGAAAAGCACAGCATATTAAGGGCTTTTTACAGCAATTTAGTAAAACTGCACAAAAAACAGCAACGATGCTTAATCGAGTTGCACAGTTGTCCATTCCAATGGTAGGAGTCGACCCCGCTTTAGTTCTTTGCTACCGCGATGAATATCGGGAGATATTAGGGGATAAACGCGGTAACTTTAAGGTTCAACTGGTTCATGAGTGGCTAAATCAGTTAGTCAGTGAGCCAATTGAGATCTGCGAAGATGCTGAAAAATGGTATCTTTTTAGTCATTGTACTGAGTCAACGGCATTACCGCAAAGTATGCAACAGTGGCAAGCGATATTCCAACGTTATGGTCAACCACTTGAAGTGGTAACTACGGGGTGCTGTGGTATGGCGGGCACTTATGGGCATGAAGTGAATAACTATAAAAATTCATTGGGAATTTATCAACTGTCATGGGGAAATGCATTGAAAACACTCCCTACAGCACGTTGCTTGAGTACCGGATATTCTTGTCGTAGCCAAGTAAAACGTATTGATAATATTGAGTTAAAACATCCATTACAGGCGCTTTTGGAGATTATGCAATGATATGGAAACGAAAAACAACATTAGGACAACTTAATCATATTAGCCCAAAT