Homologs in group_1036

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05840 FBDBKF_05840 100.0 Morganella morganii S1 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase
EHELCC_11750 EHELCC_11750 100.0 Morganella morganii S2 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase
LHKJJB_11950 LHKJJB_11950 100.0 Morganella morganii S3 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase
HKOGLL_10565 HKOGLL_10565 100.0 Morganella morganii S5 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase
F4V73_RS03485 F4V73_RS03485 88.4 Morganella psychrotolerans - FAD-binding and (Fe-S)-binding domain-containing protein
PMI_RS06865 PMI_RS06865 71.7 Proteus mirabilis HI4320 - FAD-binding and (Fe-S)-binding domain-containing protein

Distribution of the homologs in the orthogroup group_1036

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1036

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77748 0.0 1570 71 2 1021 1 ydiJ D-2-hydroxyglutarate dehydrogenase Escherichia coli (strain K12)
A0A0H3KZS3 0.0 1543 70 2 1021 1 ydiJ D-2-hydroxyglutarate dehydrogenase Pantoea ananatis (strain AJ13355)
Q57252 0.0 1290 59 6 1030 1 HI_1163 D-2-hydroxyglutarate dehydrogenase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q88EH0 0.0 993 50 13 1022 2 ydiJ D-2-hydroxyglutarate dehydrogenase Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
P94535 1.58e-38 154 25 13 512 3 glcD Glycolate oxidase subunit GlcD Bacillus subtilis (strain 168)
Q94AX4 4.53e-36 148 28 20 526 1 DLD D-lactate dehydrogenase [cytochrome], mitochondrial Arabidopsis thaliana
Q86WU2 1.3e-29 127 25 14 502 1 LDHD Probable D-lactate dehydrogenase, mitochondrial Homo sapiens
H6LBS1 5.09e-27 119 24 16 498 1 lctD Lactate dehydrogenase (NAD(+),ferredoxin) subunit LctD Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655 / WB1)
D4MUV9 1.7e-25 115 25 17 510 1 CL2_23160 D-lactate dehydrogenase Anaerostipes hadrus
F1QXM5 3.82e-25 114 25 21 537 2 ldhd Probable D-lactate dehydrogenase, mitochondrial Danio rerio
Q7TNG8 1.22e-24 112 24 13 492 1 Ldhd Probable D-lactate dehydrogenase, mitochondrial Mus musculus
A4VGK4 8.61e-23 106 24 16 505 1 d2hgdh D-2-hydroxyglutarate dehydrogenase Stutzerimonas stutzeri (strain A1501)
P0AEP9 2.52e-21 102 24 14 499 1 glcD Glycolate oxidase subunit GlcD Escherichia coli (strain K12)
P0AEQ0 2.52e-21 102 24 14 499 3 glcD Glycolate oxidase subunit GlcD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q12627 5.97e-20 99 21 13 497 3 DLD1 D-lactate dehydrogenase [cytochrome], mitochondrial Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
Q8N465 3.11e-19 96 24 16 500 1 D2HGDH D-2-hydroxyglutarate dehydrogenase, mitochondrial Homo sapiens
P32891 9.24e-19 95 22 14 497 1 DLD1 D-lactate dehydrogenase [cytochrome] 1, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q7XI14 1.61e-18 94 24 22 546 3 D2HGDH Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial Oryza sativa subsp. japonica
B8B7X6 1.67e-18 94 24 23 546 3 D2HGDH Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial Oryza sativa subsp. indica
O29853 2.06e-18 92 25 16 456 1 dld D-lactate dehydrogenase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q1JPD3 2.38e-18 93 24 14 496 2 D2HGDH D-2-hydroxyglutarate dehydrogenase, mitochondrial Bos taurus
Q8CIM3 3.14e-18 93 23 12 496 1 D2hgdh D-2-hydroxyglutarate dehydrogenase, mitochondrial Mus musculus
O23240 2.13e-17 90 24 20 500 1 D2HGDH D-2-hydroxyglutarate dehydrogenase, mitochondrial Arabidopsis thaliana
P84850 3.65e-17 89 22 12 496 1 D2hgdh D-2-hydroxyglutarate dehydrogenase, mitochondrial Rattus norvegicus
P39976 5.32e-17 89 21 17 538 1 DLD3 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P0DV35 5.54e-17 88 22 19 557 1 XVT_549 D-2-hydroxyglutarate dehydrogenase Xanthomonas citri pv. viticola (strain LMG 965 / NCPPB 2475 / ICMP 3867 / CFBP 7660)
A1L258 5.91e-17 89 23 17 495 2 d2hgdh D-2-hydroxyglutarate dehydrogenase, mitochondrial Danio rerio
Q9V778 8.47e-17 89 26 13 383 2 Agps Alkylglycerone-phosphate synthase Drosophila melanogaster
P9WIT1 9.43e-16 84 25 18 488 1 Rv2280 Uncharacterized FAD-linked oxidoreductase Rv2280 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WIT0 9.43e-16 84 25 18 488 3 MT2338 Uncharacterized FAD-linked oxidoreductase MT2338 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
O00116 4.38e-14 80 23 14 446 1 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal Homo sapiens
P46681 1.26e-13 78 22 18 511 1 DLD2 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P97275 3.7e-13 77 24 12 372 1 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal Cavia porcellus
Q8C0I1 3.95e-13 77 23 11 376 1 Agps Alkyldihydroxyacetonephosphate synthase, peroxisomal Mus musculus
Q9EQR2 1.07e-12 75 24 10 317 1 Agps Alkyldihydroxyacetonephosphate synthase, peroxisomal Rattus norvegicus
O45218 3.52e-12 73 22 11 397 2 ads-1 Alkyldihydroxyacetonephosphate synthase Caenorhabditis elegans
Q46911 7.44e-09 63 30 8 221 3 ygcU Uncharacterized FAD-linked oxidoreductase YgcU Escherichia coli (strain K12)
Q8X7S0 7.77e-09 63 30 8 221 3 ygcU Uncharacterized FAD-linked oxidoreductase YgcU Escherichia coli O157:H7
O97157 8.31e-08 60 25 6 252 3 None Alkyldihydroxyacetonephosphate synthase Trypanosoma brucei brucei
P56216 1.77e-07 58 32 6 162 1 VAOA Vanillyl-alcohol oxidase Penicillium simplicissimum
O96759 5.86e-07 57 24 7 253 1 eapA Alkyldihydroxyacetonephosphate synthase Dictyostelium discoideum
A0R607 1.15e-05 52 31 4 138 1 dprE1 Decaprenylphosphoryl-beta-D-ribose oxidase Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
O17397 6.1e-05 50 33 1 99 3 F52H2.6 Diminuto-like protein Caenorhabditis elegans
Q3ZC33 8.04e-05 50 25 4 158 2 GULO L-gulonolactone oxidase Bos taurus
Q796P5 0.000104 49 27 3 98 3 yitY Uncharacterized FAD-linked oxidoreductase YitY Bacillus subtilis (strain 168)
P43801 0.000111 49 19 10 361 3 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9C1X2 0.000239 48 22 17 507 3 SPBC713.03 Putative D-lactate dehydrogenase C713.03, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P58710 0.000274 48 23 5 186 1 Gulo L-gulonolactone oxidase Mus musculus
Q7SGY1 0.000422 48 27 5 144 3 alo-1 Putative D-arabinono-1,4-lactone oxidase Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
O47881 0.000643 47 26 4 126 1 None L-galactono-1,4-lactone dehydrogenase, mitochondrial Brassica oleracea

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_12090
Feature type CDS
Gene glcD
Product FAD/FMN-containing lactate dehydrogenase/glycolate oxidase
Location 8264 - 11332 (strand: 1)
Length 3069 (nucleotides) / 1022 (amino acids)

Contig

Accession ZDB_527
Length 181446 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1036
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01565 FAD binding domain
PF02913 FAD linked oxidases, C-terminal domain
PF13183 4Fe-4S dicluster domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0277 Energy production and conversion (C) C FAD/FMN-containing lactate dehydrogenase/glycolate oxidase

Protein Sequence

MIPRLTQSPQVSPAVERYIHALNESGFTGDTTTRYGDRLILATDNSIYQLLPQAIVFPRSTADVILVMRLAAQDEFRSVTFTPRGGGTGTNGQSLNNGVVIDLSRYMNRILEINPEQGWVRAEAGVIKDQLNAYLKPYGYFFAPELSTSNRATLGGMINTDASGQGSLVYGKTSDHVLGLRSVLLNGELLDTAPLPVSEARRCAQEESAAGELYRTTLESCETHRQTILESFPKLNRFLTGYDLRHVFSDDMQTFDLTRILTGSEGTLAVITEAKLNIMPIPEVRRLVNVKYDAFDSALRNAPFMVEAQALSVETVDSKVLNLAREDIVWHSVSELITDVPDKTLLGLNIVEFCGDDEALIDRQVASLCERLDSLMANNEAGVIGYQVCRELSGIERIYAMRKKAVGLLGNSKGAAKPIPFVEDTCVPPEHLADYITEFRALLDSHHLEYGMFGHVDAGVLHVRPALDMCSPEQEMLMKQISDDIVGLTAKYGGLLWGEHGKGFRAQYSEAFFGDTLYRELRRIKGAFDPENRLNPGKICAPLTSDAPMMQVDTIKRGTYDRTIPVEVRNTFSGAMNCNGNGLCFNFDVKSPMCPSMKVTQSRFHSPKGRAGLVREWLRLLAEQGTDPALLSQAVPQNRISLRGLIEKIGNTRRASRGEYDFSHEVKESMSGCLACKACSTQCPIKIDVPEFRARFLALYHGRYLRPLRDHLVANVEAGAPLMAKAPKMFNFFLKQPWVQKLSEKTVGMTDLPLLSSPSLKQQLAGSNAVSVTLEMLESMSEEQRRAGRYLFIVQDPFTSYFDAKVVADFAALTEKLGFQPVLLPFSPNGKAQHIKGFLARFARTANKTADFLNRVARLGCPMAGVDPALVLCYRDEYKTVLPPEKQQFRVMLVHEFLTEYADLLPVKDISEDTPPWYLFSHCTEATALPDSVKIWQNLFRRFGATLQSVSTGCCGMAGTYGHEMPNLARSKGIYQLSWAQPYQSLPSERCLTTGYSCRSQVKRMEGKVMLHPLQALLTLVS

Flanking regions ( +/- flanking 50bp)

ATATTGTCAGATTTGCAATGTGACCATTTATGATAAAAGAGCCGCAGATAATGATCCCACGATTAACGCAATCCCCACAGGTAAGCCCGGCGGTTGAACGTTATATTCACGCCCTCAATGAAAGCGGATTTACCGGCGATACCACCACCCGCTATGGCGACCGGCTGATACTCGCGACCGACAACAGTATTTATCAGCTTCTGCCGCAGGCAATCGTTTTCCCGCGTTCGACCGCCGATGTGATTCTGGTGATGCGCCTCGCCGCACAGGATGAATTCCGGTCGGTTACCTTTACCCCGCGCGGCGGCGGTACGGGCACCAATGGTCAGTCGCTGAATAACGGGGTGGTGATCGATTTATCCCGCTATATGAACCGCATTCTTGAAATTAACCCGGAGCAGGGCTGGGTGCGGGCGGAAGCGGGCGTGATTAAAGATCAGCTCAATGCGTATCTGAAACCTTATGGCTATTTTTTCGCGCCGGAGTTATCCACCTCCAACAGGGCCACTCTCGGCGGAATGATTAACACTGATGCTTCCGGCCAGGGCTCGCTGGTGTACGGCAAAACCTCTGACCATGTGCTGGGGCTGCGCTCGGTACTGCTTAACGGTGAGCTGCTGGATACTGCGCCGCTGCCGGTCAGTGAGGCGCGGCGCTGTGCGCAGGAGGAAAGTGCAGCGGGAGAACTTTACCGTACCACACTGGAAAGCTGTGAAACTCACCGGCAGACCATTCTGGAGAGCTTTCCGAAGCTCAACCGCTTTCTGACCGGCTATGACCTGCGCCATGTCTTCAGTGACGATATGCAGACCTTTGATCTGACCCGTATCCTGACCGGTTCGGAAGGCACACTGGCGGTGATCACTGAGGCAAAACTCAACATCATGCCGATCCCGGAAGTGCGCCGCCTGGTGAATGTCAAATATGATGCATTTGATTCTGCGCTGCGCAATGCCCCGTTTATGGTGGAGGCTCAGGCGCTGTCAGTGGAAACCGTGGATTCAAAAGTGCTGAATCTGGCGCGGGAAGATATCGTCTGGCATTCCGTCAGTGAATTGATCACGGATGTGCCGGATAAGACCCTGCTGGGATTAAATATCGTTGAATTCTGCGGTGATGATGAAGCGCTGATTGACAGGCAGGTTGCGTCACTGTGTGAACGCCTGGATTCATTAATGGCAAATAATGAAGCGGGTGTGATTGGCTATCAGGTCTGCCGTGAACTGAGTGGTATTGAGCGTATTTATGCAATGCGCAAAAAAGCGGTGGGTCTGCTCGGTAACAGTAAAGGGGCGGCAAAACCGATCCCGTTTGTCGAAGATACCTGTGTGCCGCCGGAACATCTGGCGGATTACATCACAGAGTTCCGCGCGCTGCTGGACAGTCATCACCTGGAATACGGCATGTTCGGTCATGTGGATGCGGGCGTATTGCATGTGCGTCCGGCGCTGGATATGTGCTCTCCGGAACAGGAAATGCTGATGAAGCAGATTTCCGATGATATTGTCGGGCTGACTGCCAAATACGGCGGGCTGCTGTGGGGTGAGCACGGTAAAGGGTTCCGGGCGCAGTACAGTGAGGCTTTTTTCGGTGACACGCTGTATCGCGAACTGCGCCGCATCAAAGGGGCATTTGACCCGGAAAACCGGCTCAATCCCGGCAAAATTTGTGCGCCGTTAACCAGTGACGCACCGATGATGCAGGTGGATACTATCAAGCGCGGCACCTATGACAGAACGATCCCCGTTGAGGTCAGAAATACGTTTTCCGGCGCGATGAACTGTAACGGCAACGGCCTGTGTTTTAATTTTGATGTCAAAAGCCCGATGTGTCCGTCAATGAAAGTGACGCAATCACGCTTTCACTCGCCGAAAGGCCGTGCCGGGCTGGTGCGCGAATGGCTGCGGCTGCTGGCAGAGCAGGGCACGGACCCGGCGCTGTTATCACAGGCCGTACCGCAGAACCGTATTTCACTTCGCGGACTGATTGAAAAAATCGGCAATACGCGGCGGGCATCACGCGGGGAATATGATTTCTCCCATGAAGTGAAGGAATCGATGTCCGGTTGTCTGGCCTGTAAAGCCTGCTCCACACAGTGCCCGATTAAAATTGATGTACCGGAATTCCGCGCCCGGTTTCTGGCGCTCTATCACGGCCGCTATCTGCGGCCACTGCGTGACCATCTGGTGGCAAACGTGGAAGCCGGTGCGCCGCTGATGGCGAAAGCGCCGAAGATGTTTAACTTTTTCCTGAAACAGCCGTGGGTGCAGAAACTCAGTGAAAAAACAGTGGGTATGACCGATTTACCGCTGCTGTCGTCACCGTCACTGAAACAGCAGCTGGCGGGGAGCAACGCGGTTTCCGTCACCCTGGAAATGCTGGAAAGTATGAGTGAGGAACAGCGCCGCGCCGGGCGCTATCTCTTTATCGTTCAGGATCCGTTCACCAGCTATTTTGACGCAAAAGTGGTGGCCGATTTTGCCGCACTGACGGAAAAGCTTGGTTTTCAGCCGGTGCTGCTGCCGTTCAGCCCGAACGGAAAAGCGCAGCATATTAAAGGTTTTCTCGCCCGCTTTGCCCGTACGGCAAACAAAACGGCGGATTTCCTCAACCGGGTGGCACGGCTCGGCTGTCCGATGGCGGGTGTCGATCCGGCGCTGGTGCTCTGTTACCGCGATGAATACAAAACTGTTCTGCCACCGGAGAAACAGCAGTTTCGCGTGATGTTAGTCCATGAATTTCTGACAGAATATGCGGATTTATTACCGGTGAAAGATATCAGTGAGGATACTCCCCCCTGGTATCTGTTCAGCCATTGTACCGAGGCCACTGCACTGCCGGACAGTGTGAAAATCTGGCAGAATCTGTTCCGCCGGTTTGGCGCAACACTGCAGTCTGTCAGCACCGGCTGCTGCGGTATGGCGGGGACATACGGCCATGAGATGCCGAACCTGGCGCGCTCGAAAGGAATTTATCAGCTTTCCTGGGCGCAGCCGTACCAGTCACTGCCATCAGAGCGCTGTCTGACCACCGGGTACTCCTGCAGGAGTCAGGTAAAACGGATGGAAGGTAAAGTGATGCTGCACCCGTTGCAGGCGCTGCTGACACTGGTATCCTGACAGCGGGATAAAACACGACGCGGAGAGCTTATTAATGATATGGAAACGAC