Homologs in group_2008

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14780 FBDBKF_14780 88.5 Morganella morganii S1 dld D-lactate dehydrogenase
EHELCC_15585 EHELCC_15585 88.5 Morganella morganii S2 dld D-lactate dehydrogenase
NLDBIP_16115 NLDBIP_16115 88.5 Morganella morganii S4 dld D-lactate dehydrogenase
LHKJJB_15725 LHKJJB_15725 88.5 Morganella morganii S3 dld D-lactate dehydrogenase
HKOGLL_14845 HKOGLL_14845 88.5 Morganella morganii S5 dld D-lactate dehydrogenase
PMI_RS04160 PMI_RS04160 71.5 Proteus mirabilis HI4320 dld D-lactate dehydrogenase

Distribution of the homologs in the orthogroup group_2008

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2008

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P06149 0.0 808 67 0 569 1 dld Quinone-dependent D-lactate dehydrogenase Escherichia coli (strain K12)
P45295 0.0 707 59 1 561 3 dld Quinone-dependent D-lactate dehydrogenase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8NRY8 8.32e-166 487 45 2 560 1 dld Quinone-dependent D-lactate dehydrogenase Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07575
Feature type CDS
Gene dld
Product D-lactate dehydrogenase
Location 1582739 - 1584484 (strand: -1)
Length 1746 (nucleotides) / 581 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2008
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01565 FAD binding domain
PF09330 D-lactate dehydrogenase, membrane binding

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0277 Energy production and conversion (C) C FAD/FMN-containing lactate dehydrogenase/glycolate oxidase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03777 D-lactate dehydrogenase (quinone) [EC:1.1.5.12] Pyruvate metabolism
Metabolic pathways
Microbial metabolism in diverse environments		 -

Protein Sequence

MNDSREPDNKQLIQVMTDIVSHKHILTEPHKTERYRKGFRSGEGSALAVVFPGTLYELWQVFKAIVEADKIVIMQAANTGLTEGSTPSGEDYDRDIVIISTLRLDKIQVLSEQQQVIALPGSTLWHLEKVLKPLGREPHSVIGSSCIGASVVGGICNNSGGSLVQRGPAYTELALYGRVSADGKAELVNHLGIELGSSPEAILNGLENRQYGDDDIESTDKPASDPDYQQRIRDVDADTPSRFNADERRLFEASGCAGKLVVFAVRLDTFPSQGESKVFYIGTNTPDVLEDIRRHILADFTHLPVAGEYMHRECYDIAKVYGKDSFLMIDKLGTDKMPKLFTIKGRMDAVCNKIPFLPKHFIDRAMQMLSHLWPNHLPRRMEEYHEKYEHHLMLKMSGDGIDEARQWLSGFFDSADGAFFECDAKEGADAFLHRFVAAGAAIRYHAVNSQKVEDILALDIALRRNDRVWLEQLPPEIEDKLVHKLYYGHFLCHVFHQDYIVKKGVDPHALKEEMLNILNARGAEYPAEHNVGHIYKAKPQLRAFYKVTDPTNTMNPGLGKTSKLKFWGEGHEGCGCGDSKP

Flanking regions ( +/- flanking 50bp)

AGAGGCATAATCATCTAATGTACAATAATTAATCTGACAGGGGAAAGATCATGAACGACAGCCGGGAGCCTGACAACAAACAGCTCATTCAGGTGATGACGGATATTGTGAGTCACAAGCACATTCTGACCGAGCCGCATAAAACAGAGCGCTATCGTAAAGGCTTTCGTTCCGGTGAGGGAAGTGCGCTGGCCGTGGTTTTCCCCGGAACCTTATATGAACTGTGGCAGGTATTTAAGGCCATCGTTGAGGCAGACAAAATTGTGATTATGCAGGCCGCCAATACCGGTCTGACAGAAGGCTCCACACCCAGCGGTGAAGATTATGACCGCGATATTGTTATTATCAGTACCCTGCGGCTGGATAAAATTCAGGTATTGTCAGAACAGCAGCAGGTTATTGCATTGCCGGGCAGCACATTGTGGCACCTGGAAAAAGTACTGAAACCGCTGGGACGTGAGCCGCATTCCGTGATTGGTTCTTCCTGTATCGGGGCTTCTGTGGTCGGCGGAATTTGCAATAACTCAGGCGGTTCGCTGGTTCAGCGCGGACCCGCTTATACCGAGCTGGCATTGTACGGGCGCGTCAGTGCAGACGGCAAAGCAGAGCTGGTTAATCACCTTGGTATTGAATTAGGGTCATCACCGGAGGCGATATTAAACGGCCTGGAAAACCGGCAGTACGGCGATGATGATATTGAAAGCACGGATAAACCGGCATCTGATCCTGATTATCAGCAGCGCATCCGTGATGTGGATGCGGATACGCCTTCACGTTTTAATGCTGATGAACGGCGTCTGTTTGAAGCCTCCGGGTGTGCCGGGAAGCTGGTGGTGTTTGCTGTGCGCCTTGATACGTTCCCGTCACAGGGCGAAAGCAAGGTATTTTACATCGGTACTAATACACCGGACGTGCTGGAAGATATCCGCCGCCATATTCTTGCGGATTTTACCCATCTGCCTGTTGCCGGTGAATATATGCACCGCGAATGTTATGACATCGCGAAAGTGTACGGTAAAGACAGTTTCCTGATGATCGATAAACTCGGCACGGATAAAATGCCGAAGCTGTTTACCATCAAAGGGCGGATGGATGCGGTATGTAATAAAATTCCGTTCTTACCAAAGCACTTTATTGACAGAGCAATGCAAATGCTCAGCCACTTGTGGCCAAATCACCTGCCACGGCGGATGGAAGAGTATCATGAGAAATACGAGCACCATCTGATGCTGAAAATGTCAGGGGATGGCATTGATGAAGCGCGTCAGTGGCTGAGCGGATTTTTTGATTCAGCAGACGGTGCTTTTTTTGAATGTGATGCGAAAGAGGGTGCAGATGCCTTTTTACACCGCTTTGTGGCAGCCGGTGCGGCTATCCGCTATCACGCGGTAAACAGTCAGAAAGTGGAAGATATTCTGGCGCTGGATATTGCGCTGCGGCGCAACGACCGCGTGTGGCTGGAACAACTGCCGCCGGAAATTGAAGATAAACTGGTGCATAAATTGTATTACGGACACTTTTTATGCCATGTTTTTCATCAGGATTATATTGTGAAGAAAGGCGTTGATCCGCATGCGCTGAAAGAAGAGATGCTTAACATTCTCAATGCGCGCGGAGCAGAATACCCGGCAGAGCACAATGTTGGTCATATCTATAAAGCCAAACCACAATTAAGAGCATTCTATAAAGTAACGGATCCGACCAATACTATGAACCCGGGGCTGGGGAAAACCAGCAAATTAAAATTCTGGGGTGAAGGGCATGAAGGGTGCGGCTGCGGAGATAGCAAGCCGTAACAGGGTTTATACCCAACGTCATTCGAATTGCAGGCAGGCGGCAAGGGAAG