PF01476


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01476, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 29 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01476
Description LysM domain

Occurence in the database

PF01476 is associated with 29 different proteins (see tab "Protein list" and "Profile")
The 29 proteins are classified into 6 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_640 FBDBKF_02090 105691 107073 1 mepM murein DD-endopeptidase MepM Morganella morganii S1
1 group_1029 FBDBKF_05800 162514 163596 -1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S1
2 group_1868 FBDBKF_13960 84905 86302 1 mltD murein transglycosylase D Morganella morganii S1
3 group_421 FBDBKF_18970 12138 13259 -1 nlpD murein hydrolase activator NlpD Morganella morganii S1
4 group_640 EHELCC_02560 493511 494893 1 mepM murein DD-endopeptidase MepM Morganella morganii S2
5 group_1868 EHELCC_11630 169781 171178 1 mltD murein transglycosylase D Morganella morganii S2
6 group_1029 EHELCC_11790 17898 18980 1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S2
7 group_421 EHELCC_18715 12138 13259 -1 nlpD murein hydrolase activator NlpD Morganella morganii S2
8 group_640 NLDBIP_00900 185243 186625 -1 mepM murein DD-endopeptidase MepM Morganella morganii S4
9 group_1868 NLDBIP_11975 169781 171178 1 mltD murein transglycosylase D Morganella morganii S4
10 group_1029 NLDBIP_12130 17853 18935 1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S4
11 group_421 NLDBIP_18590 12254 13375 1 nlpD murein hydrolase activator NlpD Morganella morganii S4
12 group_640 LHKJJB_01135 206060 207442 1 mepM murein DD-endopeptidase MepM Morganella morganii S3
13 group_1868 LHKJJB_11835 169781 171178 1 mltD murein transglycosylase D Morganella morganii S3
14 group_1029 LHKJJB_11990 17898 18980 1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S3
15 group_421 LHKJJB_18585 12138 13259 -1 nlpD murein hydrolase activator NlpD Morganella morganii S3
16 group_640 HKOGLL_01175 211571 212953 1 mepM murein DD-endopeptidase MepM Morganella morganii S5
17 group_1868 HKOGLL_10445 169781 171178 1 mltD murein transglycosylase D Morganella morganii S5
18 group_1029 HKOGLL_10605 17898 18980 1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK Morganella morganii S5
19 group_421 HKOGLL_18320 12138 13259 -1 nlpD murein hydrolase activator NlpD Morganella morganii S5
20 group_1029 F4V73_RS03525 753880 754965 1 L,D-transpeptidase family protein Morganella psychrotolerans
21 group_640 F4V73_RS04455 941703 943061 1 mepM murein DD-endopeptidase MepM Morganella psychrotolerans
22 group_3725 F4V73_RS12075 569289 573139 1 inverse autotransporter beta domain-containing protein Morganella psychrotolerans
23 group_1868 F4V73_RS12815 162322 163719 1 mltD murein transglycosylase D Morganella psychrotolerans
24 group_421 F4V73_RS13880 413571 414680 -1 nlpD murein hydrolase activator NlpD Morganella psychrotolerans
25 group_25 PMI_RS00110 37240 44316 -1 Ig-like domain-containing protein Proteus mirabilis HI4320
26 group_1868 PMI_RS01080 267762 269096 -1 mltD murein transglycosylase D Proteus mirabilis HI4320
27 group_640 PMI_RS05565 1213205 1214533 1 mepM murein DD-endopeptidase MepM Proteus mirabilis HI4320
28 group_421 PMI_RS11020 2427069 2428193 -1 nlpD murein hydrolase activator NlpD Proteus mirabilis HI4320