Homologs in group_421

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_18715 EHELCC_18715 100.0 Morganella morganii S2 nlpD murein hydrolase activator NlpD
NLDBIP_18590 NLDBIP_18590 100.0 Morganella morganii S4 nlpD murein hydrolase activator NlpD
LHKJJB_18585 LHKJJB_18585 100.0 Morganella morganii S3 nlpD murein hydrolase activator NlpD
HKOGLL_18320 HKOGLL_18320 100.0 Morganella morganii S5 nlpD murein hydrolase activator NlpD
F4V73_RS05050 F4V73_RS05050 43.9 Morganella psychrotolerans - peptidoglycan DD-metalloendopeptidase family protein
F4V73_RS13880 F4V73_RS13880 88.6 Morganella psychrotolerans nlpD murein hydrolase activator NlpD
PMI_RS11020 PMI_RS11020 57.6 Proteus mirabilis HI4320 nlpD murein hydrolase activator NlpD

Distribution of the homologs in the orthogroup group_421

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_421

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q56131 1.55e-106 320 49 13 398 3 nlpD Murein hydrolase activator NlpD Salmonella typhi
P40827 1.17e-103 313 48 13 401 3 nlpD Murein hydrolase activator NlpD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P39700 1.29e-103 313 48 12 397 2 nlpD Murein hydrolase activator NlpD Salmonella dublin
P0ADA4 7.43e-100 303 46 10 403 3 nlpD Murein hydrolase activator NlpD Shigella flexneri
P0ADA3 7.43e-100 303 46 10 403 1 nlpD Murein hydrolase activator NlpD Escherichia coli (strain K12)
P44833 9.71e-79 250 48 4 280 3 lppB Outer membrane antigenic lipoprotein B Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P36685 4.29e-72 231 40 11 370 3 lppB Outer membrane antigenic lipoprotein B (Fragment) Histophilus somni
Q46798 7.16e-60 196 41 5 263 3 ygeR Uncharacterized lipoprotein YgeR Escherichia coli (strain K12)
P45682 6.62e-55 185 41 5 259 3 PA3623 Lipoprotein NlpD/LppB homolog Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P47764 1.77e-52 172 77 0 97 3 nlpD Lipoprotein NlpD (Fragment) Yersinia enterocolitica
P57493 2.07e-38 143 32 5 258 3 BU418 Protein NlpD/LppB homolog Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
A0A0H3C9Q9 8.29e-27 115 32 7 276 3 dipM Cell division protein DipM Caulobacter vibrioides (strain NA1000 / CB15N)
P37690 3.08e-13 73 37 3 119 1 envC Murein hydrolase activator EnvC Escherichia coli (strain K12)
P44864 3.56e-12 70 38 3 118 4 HI_0756 Uncharacterized protein HI_0756 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44693 2.81e-10 65 36 1 102 3 HI_0409 Uncharacterized metalloprotease HI_0409 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AFT1 2.31e-08 59 36 2 102 3 mepM Murein DD-endopeptidase MepM Shigella flexneri
P0AFS9 2.31e-08 59 36 2 102 1 mepM Murein DD-endopeptidase MepM Escherichia coli (strain K12)
P0AFT0 2.31e-08 59 36 2 102 3 mepM Murein DD-endopeptidase MepM Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8K9M4 6.39e-08 57 34 3 104 3 BUsg_310 Uncharacterized metalloprotease BUsg_310 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q9JZ20 3.95e-06 52 38 1 81 1 NMB1333 Uncharacterized protein NMB1333 Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q89AI9 7.41e-06 51 31 2 101 3 bbp_296 Uncharacterized metalloprotease bbp_296 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O64046 8.37e-06 51 33 5 120 3 yomI Probable tape measure protein Bacillus phage SPbeta
O31976 8.6e-06 51 33 5 120 3 yomI SPbeta prophage-derived uncharacterized transglycosylase YomI Bacillus subtilis (strain 168)
A0A0H3K6J4 0.000183 46 34 3 105 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain Newman)
Q5HJ99 0.000183 46 34 3 105 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain COL)
O33599 0.000183 46 34 3 105 1 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q7A7T0 0.000188 46 34 3 105 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain N315)
Q99WV0 0.000188 46 34 3 105 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q8NYG1 0.000221 46 34 3 105 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain MW2)
Q6GCJ6 0.000221 46 34 3 105 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain MSSA476)
Q6GK35 0.000223 46 34 3 105 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain MRSA252)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_18970
Feature type CDS
Gene nlpD
Product murein hydrolase activator NlpD
Location 12138 - 13259 (strand: -1)
Length 1122 (nucleotides) / 373 (amino acids)

Contig

Accession contig_37
Length 25512 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_421
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01476 LysM domain
PF01551 Peptidase family M23

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4942 Cell cycle control, cell division, chromosome partitioning (D) D Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06194 lipoprotein NlpD - -

Protein Sequence

MNSRNPMKTIRWVAIGSLMSTVLAGCSTPYHAAPISSVDESSSAPVMTAGNDNNSTSVSTPMPVRPQLSSANNTQPVSRSVQQPRSANVQTSSDGRIQYNRNYDAIPKGSYSGNTYTVQRGDTLFYIAYISGSDFRELASQNNIPEPYSLNEGQVIRLSNGGGNNVAPVSSGTQVATNRNTPQNGVVDSQPTNAYSESAGAKPAGGKMLSSQVTAQAKANNGTAATTAATTAAVTAPATTTSAPVAVNSGSFKWGWPAEGKVISNYTGPTSGNRGIDIGGTRGQPVFASAPGKVVYTGNALRGYGNLVIIKHNDDFLTAYAHNDSILVKDQQDVAAGQKIATMGSSGTTSVRLHFEIRYKGKSVNPLQYLPQR

Flanking regions ( +/- flanking 50bp)

TCTTTCTGATTGTCAGTTTTCGCACTATTTCCAGTTTCGGGAGAAGGAATATGAACTCAAGAAACCCTATGAAAACAATACGATGGGTTGCAATTGGGTCACTGATGAGCACGGTTCTGGCCGGATGCTCAACGCCGTATCATGCCGCACCAATCAGCAGTGTGGACGAAAGCAGCAGTGCACCGGTAATGACAGCAGGCAATGATAACAACAGTACATCTGTGTCCACACCGATGCCGGTACGTCCTCAGCTCAGTTCCGCCAATAACACACAGCCGGTCAGCCGGAGTGTGCAGCAGCCGCGCTCTGCCAATGTGCAGACCAGCAGCGATGGCCGGATTCAGTACAACCGTAATTATGATGCGATCCCGAAAGGCAGTTACAGCGGAAATACCTATACGGTTCAGCGCGGTGATACATTATTTTACATCGCTTATATCTCCGGATCTGACTTCCGCGAACTGGCATCACAGAACAATATTCCTGAGCCGTACAGCCTGAACGAAGGGCAGGTGATTCGGTTAAGCAACGGCGGCGGCAACAATGTTGCACCGGTCAGCAGCGGCACTCAGGTCGCAACAAATAGGAATACTCCGCAAAACGGGGTGGTTGATTCTCAACCAACTAATGCGTATTCTGAATCTGCAGGCGCTAAACCGGCCGGTGGTAAGATGCTCTCATCTCAGGTCACCGCACAGGCAAAAGCGAATAACGGCACTGCCGCCACCACAGCGGCAACAACCGCAGCCGTTACCGCACCGGCAACAACAACCAGCGCGCCTGTCGCCGTAAATAGTGGTTCCTTTAAATGGGGCTGGCCAGCGGAAGGCAAAGTCATTTCCAACTACACAGGACCTACCAGCGGTAACCGGGGTATTGATATCGGTGGTACACGTGGACAGCCTGTTTTTGCTTCAGCGCCGGGTAAAGTGGTGTATACCGGTAATGCGTTACGCGGCTACGGTAATCTGGTCATCATCAAGCACAATGATGATTTCCTGACAGCCTACGCGCATAACGATTCCATCCTGGTTAAAGATCAGCAGGACGTCGCAGCTGGTCAGAAAATTGCCACGATGGGCAGCAGCGGAACCACATCTGTAAGATTACACTTTGAAATTCGTTACAAGGGAAAATCAGTCAACCCGCTGCAGTACTTACCGCAGCGATAAACGGCAGAACAGCTTGTTCTGCCTGAATTATCGGGGTAGGAGCAAGCTGA