Homologs in group_421

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18970 FBDBKF_18970 57.6 Morganella morganii S1 nlpD murein hydrolase activator NlpD
EHELCC_18715 EHELCC_18715 57.6 Morganella morganii S2 nlpD murein hydrolase activator NlpD
NLDBIP_18590 NLDBIP_18590 57.6 Morganella morganii S4 nlpD murein hydrolase activator NlpD
LHKJJB_18585 LHKJJB_18585 57.6 Morganella morganii S3 nlpD murein hydrolase activator NlpD
HKOGLL_18320 HKOGLL_18320 57.6 Morganella morganii S5 nlpD murein hydrolase activator NlpD
F4V73_RS05050 F4V73_RS05050 42.4 Morganella psychrotolerans - peptidoglycan DD-metalloendopeptidase family protein
F4V73_RS13880 F4V73_RS13880 56.1 Morganella psychrotolerans nlpD murein hydrolase activator NlpD

Distribution of the homologs in the orthogroup group_421

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_421

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q56131 6.05e-106 319 48 12 399 3 nlpD Murein hydrolase activator NlpD Salmonella typhi
P40827 4.22e-103 311 46 11 410 3 nlpD Murein hydrolase activator NlpD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P39700 4.86e-103 311 46 11 410 2 nlpD Murein hydrolase activator NlpD Salmonella dublin
P0ADA4 1.15e-100 305 46 7 393 3 nlpD Murein hydrolase activator NlpD Shigella flexneri
P0ADA3 1.15e-100 305 46 7 393 1 nlpD Murein hydrolase activator NlpD Escherichia coli (strain K12)
P44833 1.56e-82 260 48 4 278 3 lppB Outer membrane antigenic lipoprotein B Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P36685 2.8e-77 244 46 7 305 3 lppB Outer membrane antigenic lipoprotein B (Fragment) Histophilus somni
Q46798 6.63e-67 214 44 2 250 3 ygeR Uncharacterized lipoprotein YgeR Escherichia coli (strain K12)
P45682 1.94e-59 197 43 5 257 3 PA3623 Lipoprotein NlpD/LppB homolog Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P47764 1.1e-50 167 78 0 97 3 nlpD Lipoprotein NlpD (Fragment) Yersinia enterocolitica
P57493 1.38e-39 146 34 3 245 3 BU418 Protein NlpD/LppB homolog Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
A0A0H3C9Q9 7.06e-27 115 30 6 270 3 dipM Cell division protein DipM Caulobacter vibrioides (strain NA1000 / CB15N)
P44864 6.56e-14 75 37 3 132 4 HI_0756 Uncharacterized protein HI_0756 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37690 3.97e-13 73 33 4 152 1 envC Murein hydrolase activator EnvC Escherichia coli (strain K12)
P44693 2.73e-10 65 35 1 97 3 HI_0409 Uncharacterized metalloprotease HI_0409 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AFT1 1.96e-08 59 34 4 105 3 mepM Murein DD-endopeptidase MepM Shigella flexneri
P0AFS9 1.96e-08 59 34 4 105 1 mepM Murein DD-endopeptidase MepM Escherichia coli (strain K12)
P0AFT0 1.96e-08 59 34 4 105 3 mepM Murein DD-endopeptidase MepM Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8K9M4 5.88e-08 57 33 3 95 3 BUsg_310 Uncharacterized metalloprotease BUsg_310 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
A0A0H3K6J4 1.02e-07 56 33 5 148 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain Newman)
Q5HJ99 1.02e-07 56 33 5 148 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain COL)
O33599 1.02e-07 56 33 5 148 1 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q7A7T0 1.08e-07 56 33 5 148 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain N315)
Q99WV0 1.08e-07 56 33 5 148 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q6GK35 1.25e-07 56 33 5 148 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain MRSA252)
Q8NYG1 2.17e-07 55 33 5 148 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain MW2)
Q6GCJ6 2.17e-07 55 33 5 148 3 lytM Glycyl-glycine endopeptidase LytM Staphylococcus aureus (strain MSSA476)
Q89AI9 3.91e-07 55 33 3 100 3 bbp_296 Uncharacterized metalloprotease bbp_296 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O64046 5.67e-07 55 36 3 101 3 yomI Probable tape measure protein Bacillus phage SPbeta
O31976 5.87e-07 55 36 3 101 3 yomI SPbeta prophage-derived uncharacterized transglycosylase YomI Bacillus subtilis (strain 168)
Q9JZ20 3.08e-05 49 36 1 85 1 NMB1333 Uncharacterized protein NMB1333 Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P0A5H2 5.54e-05 48 29 2 104 3 BQ2027_MB3815C Uncharacterized protein Mb3815c Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WKW9 5.54e-05 48 29 2 104 1 Rv3786c Uncharacterized protein Rv3786c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WKW8 5.59e-05 48 29 2 104 3 MT3894 Uncharacterized protein MT3894 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
O05156 0.000115 47 38 3 89 1 None Glycyl-glycine endopeptidase ALE-1 Staphylococcus capitis
P10547 0.000151 47 35 2 88 1 lss Lysostaphin Staphylococcus simulans
P10548 0.000196 47 35 2 88 3 lss Lysostaphin Staphylococcus staphylolyticus

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS11020
Feature type CDS
Gene nlpD
Product murein hydrolase activator NlpD
Location 2427069 - 2428193 (strand: -1)
Length 1125 (nucleotides) / 374 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_421
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01476 LysM domain
PF01551 Peptidase family M23

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4942 Cell cycle control, cell division, chromosome partitioning (D) D Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06194 lipoprotein NlpD - -

Protein Sequence

MNSESPIKHVRWAIMCSVIGFALTGCADTPYRPAPITSVNDSSSNRTVSTSPVTTNSNAGVATPIERGSTPLQTTPPPSIRVNNTTAQPQSQPRTQNVTPQNINTDGSGRIVYNRNYDNIPKGNYSGNTYTVKRGDTMFYIAWITDSDVKDLASMNNIPEPYSLNVGQVLKIGNRQVNTGTNTNVNTSVINKPSSEGVQTAQTKPSNNNSSMGPLITKPTTTTPPKTTTSTPTTSATTSNNTTATSKPAAATGKWVWPAQGKIIESYSNAPGGNKGIDISGTRGSPIVATAAGKVVYAGSALRGYGNLVIIKHNDEYLSAYAHNDTILVREQQNVNAGQQIATMGSTGTSSVRLHFEIRYKEKSLNPMSYLPKR

Flanking regions ( +/- flanking 50bp)

TACTCAACAAATTGCTAGACGCTAATGCCTTTTAAAAGGGAGAAGGAAGTATGAATTCAGAAAGCCCAATTAAGCATGTCCGCTGGGCAATCATGTGTTCGGTAATCGGATTTGCATTAACAGGCTGTGCCGACACGCCTTATCGTCCTGCACCGATAACCTCTGTCAATGATAGTTCGTCAAATCGTACCGTTTCTACATCACCTGTTACAACTAACAGTAATGCAGGAGTGGCAACACCTATTGAAAGAGGTTCAACTCCGTTACAAACAACGCCTCCTCCTTCTATTAGAGTGAATAACACAACCGCGCAGCCTCAAAGCCAGCCTCGTACGCAAAATGTTACCCCTCAAAATATCAATACGGATGGTAGCGGACGCATTGTGTATAACCGTAATTATGACAATATCCCTAAAGGGAATTACAGCGGTAACACTTATACGGTTAAACGTGGCGATACAATGTTTTATATTGCGTGGATCACGGATAGTGATGTAAAAGATTTGGCCTCGATGAACAATATTCCAGAGCCATATAGCTTAAATGTTGGACAAGTACTTAAGATTGGTAACCGTCAAGTTAATACCGGTACCAATACCAATGTAAATACTTCAGTAATTAATAAACCAAGTAGTGAAGGCGTTCAGACGGCACAAACTAAGCCGTCAAATAATAATAGCTCAATGGGGCCGTTGATCACGAAACCAACAACAACGACACCGCCAAAGACAACGACTTCGACACCAACAACTTCGGCAACAACCAGTAATAACACAACGGCAACCTCTAAACCTGCAGCCGCAACAGGTAAATGGGTATGGCCAGCACAAGGTAAAATTATTGAGAGCTACTCAAATGCACCTGGTGGTAATAAAGGTATTGATATTAGTGGTACACGAGGCTCACCCATTGTGGCAACAGCCGCAGGTAAAGTGGTTTATGCAGGGAGCGCATTACGAGGTTATGGTAATTTAGTTATCATTAAACATAATGATGAATATCTCAGTGCTTATGCTCATAACGATACAATCTTGGTACGTGAACAGCAAAATGTAAATGCAGGACAGCAAATTGCGACCATGGGAAGTACTGGTACTAGTTCTGTTCGATTACACTTTGAGATCCGTTATAAAGAAAAATCACTTAACCCAATGAGCTATTTACCTAAAAGATAAATAAACGCTTAACGTTGTTAGTGAATAATCTGAAAATTAAGCCCTTTTGT