PF01313


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01313, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01313
Description Bacterial export proteins, family 3

Occurence in the database

PF01313 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_461 FBDBKF_00645 107073 107342 1 fliQ flagellar biosynthesis protein FliQ Morganella morganii S1
1 group_315 FBDBKF_09305 93500 93766 -1 sctS type III secretion system export apparatus subunit SctS Morganella morganii S1
2 group_461 EHELCC_00900 201526 201795 -1 fliQ flagellar biosynthesis protein FliQ Morganella morganii S2
3 group_315 EHELCC_10105 52338 52604 1 sctS type III secretion system export apparatus subunit SctS Morganella morganii S2
4 group_461 NLDBIP_02560 478341 478610 1 fliQ flagellar biosynthesis protein FliQ Morganella morganii S4
5 group_315 NLDBIP_10450 30609 30875 1 sctS type III secretion system export apparatus subunit SctS Morganella morganii S4
6 group_461 LHKJJB_04075 85582 85851 1 fliQ flagellar biosynthesis protein FliQ Morganella morganii S3
7 group_315 LHKJJB_10905 160653 160919 -1 sctS type III secretion system export apparatus subunit SctS Morganella morganii S3
8 group_461 HKOGLL_02970 201731 202000 -1 fliQ flagellar biosynthesis protein FliQ Morganella morganii S5
9 group_315 HKOGLL_13965 93954 94220 -1 sctS type III secretion system export apparatus subunit SctS Morganella morganii S5
10 group_461 F4V73_RS06655 1383956 1384225 1 fliQ flagellar biosynthesis protein FliQ Morganella psychrotolerans
11 group_315 F4V73_RS08340 1727942 1728196 1 sctS type III secretion system export apparatus subunit SctS Morganella psychrotolerans
12 group_315 F4V73_RS10660 261703 261969 1 sctS type III secretion system export apparatus subunit SctS Morganella psychrotolerans
13 group_461 PMI_RS08015 1753280 1753549 1 fliQ flagellar biosynthesis protein FliQ Proteus mirabilis HI4320
14 group_315 PMI_RS13240 2939621 2939869 -1 sctS type III secretion system export apparatus subunit SctS Proteus mirabilis HI4320