Homologs in group_315

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09305 FBDBKF_09305 43.2 Morganella morganii S1 sctS type III secretion system export apparatus subunit SctS
EHELCC_10105 EHELCC_10105 43.2 Morganella morganii S2 sctS type III secretion system export apparatus subunit SctS
NLDBIP_10450 NLDBIP_10450 43.2 Morganella morganii S4 sctS type III secretion system export apparatus subunit SctS
LHKJJB_10905 LHKJJB_10905 43.2 Morganella morganii S3 sctS type III secretion system export apparatus subunit SctS
HKOGLL_13965 HKOGLL_13965 43.2 Morganella morganii S5 sctS type III secretion system export apparatus subunit SctS
F4V73_RS10660 F4V73_RS10660 45.7 Morganella psychrotolerans sctS type III secretion system export apparatus subunit SctS
PMI_RS13240 PMI_RS13240 40.5 Proteus mirabilis HI4320 sctS type III secretion system export apparatus subunit SctS

Distribution of the homologs in the orthogroup group_315

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_315

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69983 4.48e-21 82 51 0 76 3 yscS Yop proteins translocation protein S Yersinia pseudotuberculosis serotype I (strain IP32953)
P69982 4.48e-21 82 51 0 76 3 yscS Yop proteins translocation protein S Yersinia pestis
P0A1L7 8.13e-12 58 44 1 79 1 spaQ Surface presentation of antigens protein SpaQ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1M3 8.13e-12 58 44 1 79 3 spaQ Surface presentation of antigens protein SpaQ Salmonella typhisuis
P0A1L8 8.13e-12 58 44 1 79 3 spaQ Surface presentation of antigens protein SpaQ Salmonella typhi
P0A1M2 8.13e-12 58 44 1 79 3 spaQ Surface presentation of antigens protein SpaQ Salmonella senftenberg
P0A1M1 8.13e-12 58 44 1 79 3 spaQ Surface presentation of antigens protein SpaQ Salmonella gallinarum
P0A1M0 8.13e-12 58 44 1 79 3 spaQ Surface presentation of antigens protein SpaQ Salmonella enteritidis
P0A1L9 8.13e-12 58 44 1 79 3 spaQ Surface presentation of antigens protein SpaQ Salmonella dublin
P0A1M5 2.79e-10 54 39 0 76 3 spaQ Surface presentation of antigens protein SpaQ Shigella sonnei
P0A1M4 2.79e-10 54 39 0 76 1 spaQ Surface presentation of antigens protein SpaQ Shigella flexneri
P74891 2.96e-10 54 43 0 80 3 ssaS Secretion system apparatus protein SsaS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0CF98 1.01e-08 50 41 0 67 3 fliQ Flagellar biosynthetic protein FliQ Clostridium tetani (strain Massachusetts / E88)
P35535 1.14e-07 48 38 0 73 3 fliQ Flagellar biosynthetic protein FliQ Bacillus subtilis (strain 168)
Q89AZ1 1.23e-06 45 37 2 77 3 fliQ Flagellar biosynthetic protein FliQ Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P57185 3.62e-05 41 34 1 75 3 fliQ Flagellar biosynthetic protein FliQ Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P0A0S3 4.5e-05 41 39 0 83 3 fliQ Flagellar biosynthetic protein FliQ Helicobacter pylori (strain ATCC 700392 / 26695)
P0A0S4 4.5e-05 41 39 0 83 3 fliQ Flagellar biosynthetic protein FliQ Helicobacter pylori (strain J99 / ATCC 700824)
Q44906 8.32e-05 40 39 1 82 3 fliQ Flagellar biosynthetic protein FliQ Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
O67774 0.000136 40 39 0 53 3 fliQ Flagellar biosynthetic protein FliQ Aquifex aeolicus (strain VF5)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08340
Feature type CDS
Gene sctS
Product type III secretion system export apparatus subunit SctS
Location 1727942 - 1728196 (strand: 1)
Length 255 (nucleotides) / 84 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_315
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01313 Bacterial export proteins, family 3

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4794 Intracellular trafficking, secretion, and vesicular transport (U) U Type III secretory pathway, EscS/YscS component

Kegg Ortholog Annotation(s)

Protein Sequence

MMDPQLLFYAGKMLWLIFILSLPTILAATIVGVLVAIVQAITQIQEQTLGFLCKLTAVIITLFMTLSWSGQQLLIFFNQIFALL

Flanking regions ( +/- flanking 50bp)

AATGGCTGGGAAAAATTAATCCGTGCTCTGCTTTTCAGCTATCACTTCTGATGATGGATCCACAACTGCTTTTCTACGCCGGAAAAATGCTCTGGCTGATTTTTATTTTGTCACTGCCGACAATTCTTGCAGCCACTATCGTCGGGGTACTCGTGGCAATCGTGCAGGCTATTACACAGATTCAGGAACAAACACTGGGTTTTCTCTGTAAACTCACCGCTGTTATTATAACCTTGTTTATGACACTGAGCTGGTCAGGGCAGCAATTGCTGATATTTTTTAATCAGATATTTGCACTGCTATGATGGTATTCACTGACCTTATATATCCGTTTTTTACTTCACTTTTTCTGGCG