PF01261


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01261, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01261
Description Xylose isomerase-like TIM barrel

Occurence in the database

PF01261 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1272 FBDBKF_07520 17624 18598 -1 ycjR Sugar phosphate isomerase/epimerase Morganella morganii S1
1 group_1977 FBDBKF_14830 67819 68661 1 nfo deoxyribonuclease IV Morganella morganii S1
2 group_1977 EHELCC_15635 97895 98737 1 nfo deoxyribonuclease IV Morganella morganii S2
3 group_1272 EHELCC_17190 45274 46248 -1 ycjR Sugar phosphate isomerase/epimerase Morganella morganii S2
4 group_1272 NLDBIP_13795 12693 13667 -1 ycjR Sugar phosphate isomerase/epimerase Morganella morganii S4
5 group_1977 NLDBIP_16165 97895 98737 1 nfo deoxyribonuclease IV Morganella morganii S4
6 group_1272 LHKJJB_09055 146082 147056 1 ycjR Sugar phosphate isomerase/epimerase Morganella morganii S3
7 group_1977 LHKJJB_15675 17949 18791 -1 nfo deoxyribonuclease IV Morganella morganii S3
8 group_1272 HKOGLL_08605 146082 147056 1 ycjR Sugar phosphate isomerase/epimerase Morganella morganii S5
9 group_1977 HKOGLL_14795 17161 18003 -1 nfo deoxyribonuclease IV Morganella morganii S5
10 group_1977 F4V73_RS07630 1597277 1598119 1 nfo deoxyribonuclease IV Morganella psychrotolerans
11 group_1272 F4V73_RS13595 351704 352675 1 TIM barrel protein Morganella psychrotolerans
12 group_1977 PMI_RS04115 919367 920212 -1 nfo deoxyribonuclease IV Proteus mirabilis HI4320
13 group_1272 PMI_RS17065 3755945 3756907 1 sugar phosphate isomerase/epimerase family protein Proteus mirabilis HI4320