Homologs in group_4440

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4440

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4440

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q6D8V4 2.87e-13 72 28 3 176 1 oiaC 3-oxo-isoapionate decarboxylase Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
P32134 2.01e-07 55 24 6 235 4 yihM Uncharacterized protein YihM Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS17065
Feature type CDS
Gene -
Product sugar phosphate isomerase/epimerase family protein
Location 3755945 - 3756907 (strand: 1)
Length 963 (nucleotides) / 320 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4440
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF01261 Xylose isomerase-like TIM barrel

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1082 Carbohydrate transport and metabolism (G) G Sugar phosphate isomerase/epimerase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K23248 3-oxoisoapionate decarboxylase [EC:4.1.1.120] - -

Protein Sequence

MKLGIETESYHLFFQQGVMDVFDFINKATELGLDGVELNIIPDEGLHPEFGVLTSDSPEYLAKVRQAIEDKNLYCELDTRFTTPKALTKAIDIARGIGADVIRTYMFRRGQYNPKQYPKIIQDIKSIVPLLKKYRIRLAIENHEDETADEILNIVKDIDSIWVGAHCDIGNGMMAWEDPIVTVSKLAPYTYSTHFKDHIVTHDDETLVITGMPLGEGSIDIDECFRLLVEHSPVTRINLENCFPYTSHFARDKGTGGVFELSGSFEVKSPPFDTQLINPLEYYYPAKISPVALKTLMDAQERCVQVSVNKLKELRKKYCY

Flanking regions ( +/- flanking 50bp)

TATTTTCTTAATATGGCTAAATACGGGTATAGGAATTCGAGGAAGAAATTATGAAACTAGGTATTGAAACAGAGTCCTATCACCTATTTTTTCAGCAGGGTGTAATGGATGTTTTTGATTTTATAAATAAAGCAACTGAATTAGGGCTGGATGGGGTCGAATTAAATATCATTCCTGATGAAGGATTACACCCAGAATTTGGTGTGTTAACAAGTGATAGCCCTGAATATTTAGCAAAAGTACGTCAGGCAATTGAAGATAAAAATCTTTATTGTGAATTAGATACACGTTTTACAACACCAAAGGCATTAACAAAAGCAATTGATATCGCTCGAGGAATTGGTGCTGATGTGATACGTACTTATATGTTTCGTCGAGGACAATACAATCCGAAACAATACCCTAAAATTATTCAAGATATTAAGTCTATTGTTCCATTATTAAAAAAATATCGTATACGTCTTGCAATAGAAAATCATGAAGATGAAACGGCTGATGAAATCTTAAATATTGTAAAAGATATTGATTCTATTTGGGTTGGTGCACATTGTGATATTGGTAATGGCATGATGGCGTGGGAAGATCCTATAGTAACAGTGAGCAAATTAGCACCTTATACATATAGCACTCATTTTAAAGATCATATTGTTACACATGATGATGAAACACTGGTAATTACAGGAATGCCTCTTGGTGAAGGGAGTATTGATATCGATGAATGTTTTCGTTTATTAGTTGAACATTCGCCTGTAACACGTATTAACTTAGAAAACTGTTTTCCCTATACATCTCATTTTGCTAGAGATAAAGGAACGGGGGGAGTATTTGAATTAAGTGGAAGCTTTGAAGTTAAATCACCACCTTTTGATACGCAATTAATTAACCCCTTGGAATATTATTATCCAGCTAAAATTTCTCCTGTTGCATTAAAAACATTAATGGACGCACAAGAGCGTTGTGTACAAGTTTCTGTTAATAAATTAAAAGAACTAAGAAAAAAATATTGTTATTAATATATAAAAATAGTTATCAAATATTGGAGTGATCTCATGATTATTAATAC