Homologs in group_1272

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07520 FBDBKF_07520 83.6 Morganella morganii S1 ycjR Sugar phosphate isomerase/epimerase
EHELCC_17190 EHELCC_17190 83.6 Morganella morganii S2 ycjR Sugar phosphate isomerase/epimerase
NLDBIP_13795 NLDBIP_13795 83.6 Morganella morganii S4 ycjR Sugar phosphate isomerase/epimerase
LHKJJB_09055 LHKJJB_09055 83.6 Morganella morganii S3 ycjR Sugar phosphate isomerase/epimerase
HKOGLL_08605 HKOGLL_08605 83.6 Morganella morganii S5 ycjR Sugar phosphate isomerase/epimerase
PMI_RS17065 PMI_RS17065 25.4 Proteus mirabilis HI4320 - sugar phosphate isomerase/epimerase family protein

Distribution of the homologs in the orthogroup group_1272

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1272

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P32134 1.74e-157 446 67 1 319 4 yihM Uncharacterized protein YihM Escherichia coli (strain K12)
Q6D8V4 2.23e-06 52 24 4 150 1 oiaC 3-oxo-isoapionate decarboxylase Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13595
Feature type CDS
Gene -
Product TIM barrel protein
Location 351704 - 352675 (strand: 1)
Length 972 (nucleotides) / 323 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1272
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01261 Xylose isomerase-like TIM barrel

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1082 Carbohydrate transport and metabolism (G) G Sugar phosphate isomerase/epimerase

Protein Sequence

MTSDEARRIIERADNLPLYLHAYAYHLNMRFEKLLPGDLLDIAHEHNLPGVKIHVLDGETQSLSTMNDEKLAEFGEKATRYNLDINIETSASDNKTLDDAVRIALKTGASSVRFYPRYEGALSDVLKTIAADLCYLKEHYQHSGLTFVLEQHEDLKNHELVELIKNAGFPQLTLLFDFGNMINACELPMDALSAMQRHITQVHIKDAVILEEGQGFGHKACRSGEGNLPFKEMLQALICLGEERPQVISYGLEEEVDYYAPAFRFADEVADPWIPWRQMSETPLPENEISARLAQEKEDAINQIRYVRKIINEIKAEAILYSK

Flanking regions ( +/- flanking 50bp)

TTTGAATCTGTTAATTTTTTTGTTGAGCTTTGAGATAAGGAAATATACCCATGACATCAGATGAAGCCCGCCGGATTATTGAACGTGCAGATAATTTGCCACTGTATCTGCACGCGTATGCTTACCACCTGAATATGCGTTTTGAAAAACTGCTGCCAGGCGATCTTCTTGATATTGCACACGAGCATAATTTGCCGGGTGTCAAAATACATGTGCTGGATGGTGAAACACAATCGCTGTCCACCATGAATGACGAAAAACTGGCAGAGTTCGGCGAAAAAGCAACGCGTTATAATCTCGATATTAATATTGAAACCAGTGCGTCAGACAATAAAACCCTTGATGACGCTGTCAGAATTGCCCTGAAAACCGGCGCAAGTTCTGTCCGTTTCTATCCGCGTTATGAAGGTGCTCTTTCTGACGTGTTAAAAACCATTGCCGCCGACCTGTGTTATCTCAAAGAACATTATCAGCACAGCGGCCTGACATTTGTCCTCGAACAACATGAAGATTTAAAAAATCATGAATTGGTTGAGCTGATAAAAAATGCCGGTTTCCCGCAGCTTACTCTGTTATTTGATTTCGGTAATATGATCAATGCCTGCGAATTGCCGATGGATGCGCTGTCTGCCATGCAGAGACACATCACTCAGGTGCATATCAAAGATGCGGTGATCCTGGAAGAAGGACAGGGTTTCGGTCATAAAGCCTGCCGTTCCGGCGAGGGAAATCTGCCGTTTAAAGAGATGCTACAGGCATTGATATGCCTGGGCGAAGAGCGTCCGCAGGTCATTTCTTACGGGCTGGAAGAAGAAGTTGATTATTACGCACCGGCATTCCGTTTTGCAGATGAAGTTGCCGACCCGTGGATCCCGTGGCGTCAGATGAGTGAAACACCGCTGCCGGAAAATGAAATCAGTGCCCGTTTAGCCCAGGAAAAAGAGGATGCCATTAATCAGATTCGTTATGTCCGTAAAATAATAAATGAAATTAAAGCAGAGGCCATTCTATACTCTAAATAATTCCGGATGCATGTAGGCGACAAGTGAAGATAGACGGGGAACATAGATAA