Orthogroup:group_2013



Homologs in group_2013

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15125 FBDBKF_15125 Morganella morganii S1 yafK Murein L,D-transpeptidase YafK
EHELCC_11120 EHELCC_11120 Morganella morganii S2 yafK Murein L,D-transpeptidase YafK
NLDBIP_11465 NLDBIP_11465 Morganella morganii S4 yafK Murein L,D-transpeptidase YafK
LHKJJB_11325 LHKJJB_11325 Morganella morganii S3 yafK Murein L,D-transpeptidase YafK
HKOGLL_09935 HKOGLL_09935 Morganella morganii S5 yafK Murein L,D-transpeptidase YafK
F4V73_RS12320 F4V73_RS12320 Morganella psychrotolerans - murein L,D-transpeptidase family protein
PMI_RS01680 PMI_RS01680 Proteus mirabilis HI4320 - murein L,D-transpeptidase family protein

Distribution of group_2013 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2013 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2013

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2013.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 yafK 5
2 - 2

Product

# Product Occurence
1 Murein L,D-transpeptidase YafK 5
2 murein L,D-transpeptidase family protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3034 7 M Cell wall/membrane/envelope biogenesis (M) Murein L,D-transpeptidase YafK

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03734 7 L,D-transpeptidase catalytic domain

Annotations of the 2 SwissProt hits

Annotation Number of occurrences
Putative L,D-transpeptidase YafK 2

Protein length

Min length 235
Max length 250
Mean length (sd) 242.1 (4.3)
Median length 242.0

Protein length distribution