PF01171


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01171, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01171
Description PP-loop family

Occurence in the database

PF01171 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_995 FBDBKF_05555 119181 120107 1 ttcA tRNA 2-thiocytidine(32) synthetase TtcA Morganella morganii S1
1 group_1048 FBDBKF_05925 7949 9331 -1 tilS tRNA(Ile)-lysidine synthase TilS/MesJ Morganella morganii S1
2 group_1048 EHELCC_08970 8521 9903 -1 tilS tRNA(Ile)-lysidine synthase TilS/MesJ Morganella morganii S2
3 group_995 EHELCC_12035 61387 62313 -1 ttcA tRNA 2-thiocytidine(32) synthetase TtcA Morganella morganii S2
4 group_1048 NLDBIP_09350 8521 9903 -1 tilS tRNA(Ile)-lysidine synthase TilS/MesJ Morganella morganii S4
5 group_995 NLDBIP_12375 61342 62268 -1 ttcA tRNA 2-thiocytidine(32) synthetase TtcA Morganella morganii S4
6 group_1048 LHKJJB_08405 207335 208717 1 tilS tRNA(Ile)-lysidine synthase TilS/MesJ Morganella morganii S3
7 group_995 LHKJJB_12235 61387 62313 -1 ttcA tRNA 2-thiocytidine(32) synthetase TtcA Morganella morganii S3
8 group_1048 HKOGLL_07955 207335 208717 1 tilS tRNA(Ile)-lysidine synthase TilS/MesJ Morganella morganii S5
9 group_995 HKOGLL_10850 61387 62313 -1 ttcA tRNA 2-thiocytidine(32) synthetase TtcA Morganella morganii S5
10 group_995 F4V73_RS03745 795281 796201 -1 ttcA tRNA 2-thiocytidine(32) synthetase TtcA Morganella psychrotolerans
11 group_1048 F4V73_RS15970 204123 205505 1 tilS tRNA lysidine(34) synthetase TilS Morganella psychrotolerans
12 group_995 PMI_RS06580 1441215 1442135 1 ttcA tRNA 2-thiocytidine(32) synthetase TtcA Proteus mirabilis HI4320
13 group_1048 PMI_RS11195 2462294 2463619 -1 tilS tRNA lysidine(34) synthetase TilS Proteus mirabilis HI4320